implementing online testing for pr #34
Workflow file for this run
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| name: Run the tests | |
| on: [pull_request] | |
| env: | |
| PREFIX_WINDOWS: C:\Miniconda3\envs\optistim | |
| jobs: | |
| build: | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [windows-latest] | |
| shard: [1] | |
| name: Tests on ${{ matrix.os }}-shard ${{ matrix.shard }} | |
| runs-on: ${{ matrix.os }} | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Set prefix windows | |
| run: | | |
| echo "PREFIX=${{ env.PREFIX_WINDOWS }}" >> $GITHUB_ENV | |
| if: matrix.os == 'windows-latest' | |
| - name: Checkout code | |
| uses: actions/checkout@v3 | |
| - name: Setup environment | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| miniforge-variant: Mambaforge | |
| miniforge-version: latest | |
| use-mamba: true | |
| activate-environment: optistim | |
| environment-file: environment.yml | |
| - name: Print mamba info | |
| run: | | |
| mamba config --show | |
| mamba info | |
| mamba list | |
| # - name: Install bioptim on Windows | |
| # run: | |
| # uses: actions/checkout@v2 | |
| # with: | |
| # submodules: bioptim | |
| # python setup.py install | |
| # - name: Install bioptim on Windows | |
| # run: | | |
| # pwd | |
| # cd external/bioptim | |
| # ls | |
| # pwd | |
| # python setup.py install | |
| - name: Install bioptim on Windows | |
| run: | | |
| pwd | |
| cd external | |
| ./bioptim_install_windows.sh 4 ${{ env.PREFIX_WINDOWS }} | |
| cd .. | |
| if: matrix.os == 'windows-latest' && matrix.shard == 1 | |
| - name: Install extra dependencies | |
| run: mamba install pytest-cov black pytest pytest-cov codecov packaging -cconda-forge | |
| - name: Run tests without code coverage | |
| run: pytest -v --color=yes tests/shard${{ matrix.shard }} | |
| - name: Upload coverage reports to Codecov | |
| uses: codecov/codecov-action@v3 | |
| env: | |
| CODECOV_TOKEN: ${{ secrets.CODECOV_TOKEN }} |