Utilities for the Bio.tools (GitHub) under ELIXIR.
The scripts are developed using Python 3.10.0 and Pipenv as package manager.
The files are licensed under GNU General Public License v3.0.
Biotools_utils is a small package containing different Python modules, which can be used in bio.tools
| Module | Description |
|---|---|
| spdx_license_parser.py | Module for parsing SPDX licenses. |
| edam_term_extractor.py | Module for extracting EDAM terms from the tool lists. |
| Script | Description |
|---|---|
| delete_tools.py | Command-line tool for the mass deletion of tools. Requires credentials for a super user. |
The Automatic domain assignment test contains different scripts to explore the different tool parameters, which could be used for automatically assigning a tool to a domain.
More information to follow...