Publications

Kirkegaard et al 2016: "Genomic insights into members of the candidate phylum Hyd24-12 common in mesophilic anaerobic digesters" DOI: 10.1038/ismej.2016.43

• Data availability
  • The raw metagenome sequencing data is available at the European Nucleotide Archive with BioProject ID: PRJEB10929.
  • The data processing is described in the paper and the necessary workflow scripts are available at Github from the mmgenome package. The core idea behind the genome extraction using differential coverage binning was published by Albertsen et al 2013
  • The ".RData" files used for binning of genomes from metagenome sequencing data with the mmgenome package is available at figshare: Metagenomes from Randers, Metagenomes from Viborg, Metagenomes from Damhusaaen.
  • RMarkdown files for reproducing the genome binning process are available at Github: Kirkegaard et al 2016
  • The genome sequence data have been submitted to DDBJ/EMBL/GenBank databases under accession numbers LKHB00000000, LKHC00000000 and LKHD00000000.

Kirkegaard et al 2017: "The impact of immigration on microbial community composition in full-scale anaerobic digesters" DOI: 10.1038/s41598-017-09303-0

• Data availability
  • The raw sequencing data is available at the European Nucleotide Archive with BioProject ID: PRJEB15624.
  • The data processing is described in the paper
  • The ".RData" file is available at figshare
  • RMarkdown files for reproducing the figures are available at Github: Kirkegaard et al 2017