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KyQiao authored Jul 19, 2021
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# logReader

A log reader to read LAMMPS log files. Using C++ as backend and Python as interface. Automatically parsing LAMMPS log files and translate `thermo` outputs into Python attributes.

## Example

Here’s a short example of how to using `logReader`:

```python
>>> from logReader import logReader
>>> t=logReader("T15_06_08_P50.log")
>>> t.describe()
thermo data attributes are:
Step Temp E_pair E_mol TotEng Press Volume
0 1.49996 13.5451 0 15.7949 67.1466 23405.7
4e+06 1.51405 3.19639 0 5.46733 50.3107 19692.7

thermo data attributes are:
Step Temp PotEng KinEng TotEng Enthalpy Volume Press
0 1.51405 3.19639 2.27093 5.46733 65.9382 19692.7 50.3107
1000 1.49421 3.06943 2.24118 5.31061 65.1286 19719.8 49.6992
2000 1.51361 3.15507 2.27028 5.42535 65.6919 19702.3 50.1164
3000 1.48297 3.13433 2.22432 5.35865 65.4995 19703.3 50.0093
4000 1.50583 3.1298 2.2586 5.3884 65.5081 19705.1 49.9872
... ... ... ... ... ... ... ...
3.996e+06 0.6044 2.77837 0.906545 3.68491 62.7584 19340.4 50.0436
3.997e+06 0.592388 2.75465 0.888528 3.64318 62.562 19348.7 49.891
3.998e+06 0.600167 2.80198 0.900195 3.70217 62.904 19336 50.1635
3.999e+06 0.59712 2.73543 0.895625 3.63106 62.4631 19354.8 49.8018
4e+06 0.59765 2.8091 0.89642 3.70552 62.9421 19333.8 50.1988
>>> dir(t[1])
['Enthalpy', 'KinEng', 'PotEng', 'Press', 'Step', 'Temp', 'TotEng', 'Volume', '__class__', '__delattr__', '__dict__', '__dir__', '__doc__', '__eq__', '__format__', '__ge__', '__getattribute__', '__gt__', '__hash__', '__init__', '__init_subclass__', '__le__', '__lt__', '__module__', '__ne__', '__new__', '__reduce__', '__reduce_ex__', '__repr__', '__setattr__', '__sizeof__', '__str__', '__subclasshook__', '__weakref__', 'attr', 'data', 'keys', 'legalKey']
>>> print(t[1].Press[:10])
[50.310728, 49.699177, 50.11637, 50.009271, 49.987162, 49.998432, 49.899897, 50.119902, 49.863181, 50.150043]
```

each column will be stored as Python attributes for easily accessing.

## Installation

Only Windows binary is provided in release. For Linux and MacOS, build from source using:

```bash
git clone git@github.com:KyQiao/logReader.git
cd logReader
git submodule update --init
python setpy.py bdist_wheel
cd dist && pip install xxx.whl
```

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