preparing for new version

cran-comments.md

@@ -1,11 +1,12 @@
 ## Changes
-* Improved existing functions
-* Created new functions
-* Fixed a test failure on R-devel
+* New functions have been added. They are designed for three purposes:
+    + Variogram estimation and analysis
+    + Evaluation of geostatistical models of uncertainty
+    + Calibrating random forest models
 
 ## Test environments
-* ubuntu 12.04 (on travis-ci), R 3.2.1
-* x86_64-pc-linux-gnu (ubuntu 14.04), R version 3.2.1 (2015-06-18)
+* ubuntu 12.04 (on travis-ci), R 3.2.2
+* x86_64-pc-linux-gnu (ubuntu 14.04), R version 3.2.2 (2015-08-14)
 * win-builder (devel and release)
 
 ## R CMD check results
@@ -15,87 +16,28 @@ There were 2 NOTEs (win-builder):
 
 ```
 * checking CRAN incoming feasibility ... NOTE
-Maintainer: 'Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>'
+Maintainer: ‘Alessandro Samuel-Rosa <alessandrosamuelrosa@gmail.com>’
 
 Possibly mis-spelled words in DESCRIPTION:
-  Alessandro (35:57)
-  Anjos (36:42)
-  BEX (40:38)
-  DF (40:5)
-  Educa (39:58)
-  Embrapa (37:52)
-  HC (36:39)
-  Heuvelink (38:18)
-  ISRIC (38:29)
-  Janeiro (37:12)
-  Minist (39:44)
-  Pedometric (2:8)
-  Universidade (36:49)
-  Vasques (37:43)
-  da (39:55)
-  de (37:9)
-  functionalities (41:46)
-  lia (39:73)
-  pedometric (42:39)
-  pedometrics (31:37, 32:64)
-  rio (39:51)
+  Pedometric (4:8)
+  pedometrics (6:14)
 ```
 ```
 * checking package dependencies ... NOTE
   No repository set, so cyclic dependency check skipped
 ```
 
 ## Downstream dependencies
-I have also run R CMD check on the only downstream dependence of 
-***pedometrics*** (https://github.com/samuel-rosa/pedometrics/tree/master/revdep).
-I have noted the ERROR and NOTEs below.
+I have also run R CMD check on the only downstream dependence
+(https://github.com/samuel-rosa/pedometrics/tree/master/revdep). I have noted
+the following unimportant NOTEs:
 
-```
-checking dependencies in R code ... NOTE
-Missing or unexported objects:
-  ‘pedometrics::is.all.factor’ ‘pedometrics::is.any.factor’
-  ‘pedometrics::is.numint’
-```
 ```
 checking Rd cross-references ... NOTE
 Packages unavailable to check Rd xrefs: ‘spcosa’, ‘clhs’, ‘raster’, ‘geoR’
 ```
 ```
-checking examples ... ERROR
-Running examples in ‘spsann-Ex.R’ failed
-The error most likely occurred in:
-
-> base::assign(".ptime", proc.time(), pos = "CheckExEnv")
-> ### Name: optimCORR
-> ### Title: Optimization of sample configurations for spatial trend
-> ###   identification and estimation
-> ### Aliases: objCORR optimCORR
-> ### Keywords: iteration optimize spatial
-> 
-> ### ** Examples
-> 
-> require(sp)
-Loading required package: sp
-> data(meuse.grid)
-> candi <- meuse.grid[, 1:2]
-> covars <- meuse.grid[, 5]
-> set.seed(2001)
-> ## Not run: 
-> ##D # This example takes more than 5 seconds to run!
-> ##D res <- optimCORR(points = 100, candi = candi, covars = covars,
-> ##D                  use.coords = TRUE)
-> ##D objSPSANN(res) # 0.06386069
-> ##D objCORR(points = res, candi = candi, covars = covars, use.coords = TRUE)
-> ## End(Not run)
-> # Random sample
-> pts <- sample(1:nrow(candi), 5)
-> pts <- cbind(pts, candi[pts, ])
-> objCORR(points = pts, candi = candi, covars = covars, use.coords = TRUE)
-Error: 'is.any.factor' is not an exported object from 'namespace:pedometrics'
-Execution halted
+DONE
+Status: 1 NOTE
 ```
 
-Given the significant change to ***pedometrics***, I do believe most of these
-errors to be a result of changes to ***pedometrics***. The maintainer of the 
-only downstream dependence of ***pedometrics*** has been notified about the
-changes to ***pedometrics*** and will make the needed changes ASAP.