GitHub - LeBoldus-Lab/Smusiva_RNAi_transcription: generating preliminary data for Michael Gordon

Branches Tags

Name		Name	Last commit message	Last commit date
Latest commit History 1 Commit
Smusiva_RNA_counts		Smusiva_RNA_counts
.Rhistory		.Rhistory
24vs0h.list.Rds		24vs0h.list.Rds
24vs0hS.list.Rds		24vs0hS.list.Rds
72vs0h.list.Rds		72vs0h.list.Rds
72vs0hS.list.Rds		72vs0hS.list.Rds
72vs24.list.Rds		72vs24.list.Rds
72vs24R.list.Rds		72vs24R.list.Rds
72vs24S.list.Rds		72vs24S.list.Rds
DE.res.0h.txt		DE.res.0h.txt
DE.res.24h.txt		DE.res.24h.txt
DE.res.72h.txt		DE.res.72h.txt
Effector_table_SM3.csv		Effector_table_SM3.csv
Pheno_x_Time_plus_annot.txt		Pheno_x_Time_plus_annot.txt
Phenotypes		Phenotypes
RNAi_GOI_all_times_plus_annot.txt		RNAi_GOI_all_times_plus_annot.txt
Sepmu1_FilteredModels1_deflines.gff3		Sepmu1_FilteredModels1_deflines.gff3
Septoria_RNA_Analysis.Rmd		Septoria_RNA_Analysis.Rmd
Small_RNA_Analysis_for_Michael.Rmd		Small_RNA_Analysis_for_Michael.Rmd
Time_only_model.vst.Rds		Time_only_model.vst.Rds
Time_only_models.Rds		Time_only_models.Rds
Time_plus_annot.txt		Time_plus_annot.txt
all.0h.txt		all.0h.txt
all.24h.txt		all.24h.txt
all.72h.txt		all.72h.txt
all_times_plus_annot.txt		all_times_plus_annot.txt
comb_results.list.Rds		comb_results.list.Rds
count_name.Rds		count_name.Rds
data_interaction_Pheno.Rds		data_interaction_Pheno.Rds
full_model.vst.Rds		full_model.vst.Rds
full_model_noC.Rds		full_model_noC.Rds
full_model_noC.vst.Rds		full_model_noC.vst.Rds
full_models.Rds		full_models.Rds
gene_10002.pdf		gene_10002.pdf
gene_2578.pdf		gene_2578.pdf
gene_7256.pdf		gene_7256.pdf
gene_8581.pdf		gene_8581.pdf
gene_9101.pdf		gene_9101.pdf
gene_9277.pdf		gene_9277.pdf
gene_9357.pdf		gene_9357.pdf
interaction.24h.txt		interaction.24h.txt
interaction.72h.txt		interaction.72h.txt
list_counts.Rds		list_counts.Rds
pheno_at_0h.list.Rds		pheno_at_0h.list.Rds
pheno_at_24h.list.Rds		pheno_at_24h.list.Rds
pheno_at_72h.list.Rds		pheno_at_72h.list.Rds
pheno_effect_24h_vs_0h.list.Rds		pheno_effect_24h_vs_0h.list.Rds
pheno_effect_72h_vs_0h.list.Rds		pheno_effect_72h_vs_0h.list.Rds
sample_time_points.txt		sample_time_points.txt
time_comp.list.Rds		time_comp.list.Rds
transcript_to_gene_IDs.txt		transcript_to_gene_IDs.txt
vst_interaction_data_Pheno.Rds		vst_interaction_data_Pheno.Rds