Pull the entire repository and run the python script to translate the WHO catalogue to HGVS notation
The ./data/exitrif_all_variants.csv file contains a row for each exitrif sample and a column for all the variants in the the exitrif dataset that lie in the tier 1 and 2 genes as well as the variants listed in the WHO catalogue.
The value in a cell indicates whether a variant is present in a sample with where 1 indicates a resistant variant, 2 indicates a sensitive variant, 3 indicates a variant not classified in the catalogue that is sysnonymous, and 4 indicates an unclassified non sysnonynous variant.