interpretable-splicing-visualization

To launch the webpage locally:

python3 app.py

Requirements

In order to get inference from the model and run the vizualization application locally you will need to follow the steps bellow:

Setting Up virtual enviroment:

• Download python version 3.10.4

• Insid of the interpretable-splicing-vizualization create a virtual envoiroment with python version 3.10:

   python3.10 -m venv myenv

For MacOS:

source myenv/bin/activate  

For Windows:

myenv\Scripts\activate.bat

Then install the package requirements using requirements.txt:

pip3 install -r requirements.txt

ViennaRNA Package installation:

• Download the latest ViennaRNA package

  • https://www.tbi.univie.ac.at/RNA/

• Move the .tar.gz file to the interpretable-splicing-visualization directory.

• Access the ViannaRNA-< VERSION > file

 % cd ViennaRNA-2.6.4

Follow the INSTALL instructions or follow the steps bellow:

./configure --disable-lto   

make 

make install