Code

Cleanup-v2#33

Code

Merged

ardagoreci merged 16 commits intomainLigo-Biosciences/AlphaFold3:mainfrom cleanup-v2Ligo-Biosciences/AlphaFold3:cleanup-v2Copy head branch name to clipboardAug 29, 2024

+4,404-1,163

Commits

Commits on Aug 27, 2024

• Cleaner configs

  

  ardagoreci

  committed
  25d9be0

• Added validation metrics and tests

  

  ardagoreci

  committed
  bd66326

Commits on Aug 28, 2024

• fix configs and improved checkpointing

  

  ardagoreci

  committed
  b854989

• Revert to old checkpointing

  

  ardagoreci

  committed
  bf3279b

• Revert back to original checkpointing file

  

  ardagoreci

  committed
  15f13be

• Implemented naive atom attention

  

  ardagoreci

  committed
  8755dae

• Fix MSA module checkpointing

  

  ardagoreci

  committed
  2dfd8de

• Config refactoring

  

  ardagoreci

  committed
  dc4bb87

• Fix scheduler typo

  

  ardagoreci

  committed
  2cef8db

• Fixed EMA bugs

  

  ardagoreci

  committed
  10417ee

• AdamW configs and rotations for ref_pos

  

  ardagoreci

  committed
  729b62d

• proteus config

  

  ardagoreci

  committed
  efb972c

• changed default config to adamw

  

  ardagoreci

  committed
  4c94802

• increase magnitude of random translation for ref_pos

  

  ardagoreci

  committed
  1241af4

Commits on Aug 29, 2024

• Bug fixes

  

  ardagoreci

  committed
  456ae11

• bug fixes

  

  ardagoreci

  committed
  6c7d5b0