updated SSA and PCA notebooks #94
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| name: Run nbmake for the main Branch | |
| on: | |
| push: | |
| branches: [ main ] | |
| pull_request: | |
| branches: [ main ] | |
| # Allows you to run this workflow manually from the Actions tab | |
| workflow_dispatch: | |
| jobs: | |
| test: | |
| runs-on: ubuntu-latest | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| steps: | |
| - name: Checkout files in repo | |
| uses: actions/checkout@v3 | |
| - name: Setup Miniconda | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| activate-environment: pyleo | |
| environment-file: environment.yml | |
| python-version: "3.10" | |
| auto-activate-base: false | |
| - name: Conda list | |
| run: | | |
| conda activate pyleo | |
| pip install pytest-xdist nbmake | |
| pip install pandas --upgrade | |
| conda list | |
| - name: Test with pytest | |
| run: | | |
| conda activate pyleo | |
| pytest --nbmake -k 'not correlations' -n=auto --nbmake-timeout=3200 notebooks/*ipynb |