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@MD-Anderson-Bioinformatics

MD Anderson Cancer Center - Dept. of Bioinformatics and Computational Biology

Tools and projects of BCB at MD Anderson Cancer Center

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  1. BatchEffectsPackage BatchEffectsPackage Public

    The MBatch R package and Docker image are designed to help assess and correct for batch effects.

    R 16 5

  2. MBatch MBatch Public archive

    Superseded by https://github.com/MD-Anderson-Bioinformatics/BatchEffectsPackage

    R 12 1

  3. SpliceSeq SpliceSeq Public

    A tool for investigating alternative mRNA splicing in next generation mRNA sequence data.

    11

  4. NG-CHM NG-CHM Public

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    JavaScript 10 9

  5. NGCHM-R NGCHM-R Public

    An R package for creating Next-Generation Clustered Heat Maps (NG-CHM)

    R 7 3

  6. GeneSurvey GeneSurvey Public

    Gene Survey R package - take TCGA Standardized Data and make gene level cross-disease and sometimes cross platform comparisons and evaluations simpler to perform

    R 3 1

Repositories

Showing 10 of 39 repositories
  • NG-CHM Public

    A dynamic, graphical environment for exploration of clustered or non-clustered heat map data in a web browser.

    MD-Anderson-Bioinformatics/NG-CHM’s past year of commit activity
    JavaScript 10 GPL-2.0 9 131 0 Updated Nov 12, 2024
  • BCBBuildDocs Public

    Documentation for GitLab CI/CD with Docker

    MD-Anderson-Bioinformatics/BCBBuildDocs’s past year of commit activity
    Dockerfile 1 0 0 0 Updated Nov 8, 2024
  • NGCHM-R Public

    An R package for creating Next-Generation Clustered Heat Maps (NG-CHM)

    MD-Anderson-Bioinformatics/NGCHM-R’s past year of commit activity
    R 7 3 20 1 Updated Oct 31, 2024
  • NG-CHM-Artifacts Public
    MD-Anderson-Bioinformatics/NG-CHM-Artifacts’s past year of commit activity
    JavaScript 0 GPL-2.0 1 0 0 Updated Sep 17, 2024
  • tsvio Public Forked from bmbroom/tsvio

    R library for reading (subsets of) tsv files

    MD-Anderson-Bioinformatics/tsvio’s past year of commit activity
    C 1 3 0 0 Updated Jul 24, 2024
  • NGCHMDemoData Public

    Demo Data for NGCHM R package.

    MD-Anderson-Bioinformatics/NGCHMDemoData’s past year of commit activity
    R 0 1 0 0 Updated Jun 25, 2024
  • rppaspace Public

    Reverse-Phase Protein Array Super Position and Concentration EvaluationThe RPPASPACE R package provides tools for the analysis of reverse-phase protein arrays (RPPAs), which are also known as "tissue lysate arrays" or simply "lysate arrays". The package's primary purpose is to input a set of quantification files representing dilution series of s…

    MD-Anderson-Bioinformatics/rppaspace’s past year of commit activity
    R 3 1 4 0 Updated Jun 20, 2024
  • NGCHMSupportFiles Public

    Support files for NGCHM-R package

    MD-Anderson-Bioinformatics/NGCHMSupportFiles’s past year of commit activity
    R 0 2 0 0 Updated Jun 20, 2024
  • BatchEffectsInterfaceStack Public

    Docker Compose Stack for running Batch Effects Interface

    MD-Anderson-Bioinformatics/BatchEffectsInterfaceStack’s past year of commit activity
    HTML 1 0 0 0 Updated May 31, 2024
  • StandardizedData Public

    Code and packages for Standardized Data format for large scale studies.

    MD-Anderson-Bioinformatics/StandardizedData’s past year of commit activity
    JavaScript 1 0 0 0 Updated May 31, 2024
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