Update installation instructions

README.md

@@ -1,6 +1,10 @@
 # mdstudio_haddock
 
 [![Build Status](https://travis-ci.org/MD-Studio/mdstudio_haddock.svg?branch=master)](https://travis-ci.org/MD-Studio/mdstudio_haddock)
+[![Codacy Badge](https://api.codacy.com/project/badge/Grade/45c094619e7d422f8e8245774442e498)](https://www.codacy.com/manual/marcvdijk/MDStudio_haddock?utm_source=github.com&utm_medium=referral&utm_content=MD-Studio/MDStudio_haddock&utm_campaign=Badge_Grade)
+[![codecov](https://codecov.io/gh/MD-Studio/MDStudio_haddock/branch/master/graph/badge.svg)](https://codecov.io/gh/MD-Studio/MDStudio_haddock)
+
+![Configuration settings](mdstudio-logo.png)
 
 This repository gathers different interfaces to HADDOCK software (http://www.bonvinlab.org/software/haddock2.2/) developed by 
 the group of Prof. dr. Alexandre Bonvin at Utrecht University.
@@ -27,6 +31,55 @@ Within the console, all XMLRPC API methods are accessible and some of them have
 
 The complete list of commands (including native ones) can be obtained with `help` and each command has a description/usage output with `help command`.
 
+## Installation Quickstart
+MDStudio haddock can be used in the MDStudio environment as Docker container or as standalone service.
+
+### Install option 1 Pre-compiled Docker container
+MDStudio haddock can be installed quickly from a pre-compiled docker image hosted on DockerHub by:
+
+    docker pull mdstudio/mdstudio_haddock
+    docker run (-d) mdstudio/mdstudio_haddock
+
+In this mode you will first need to launch the MDStudio environment itself in order for the MDStudio haddock service to 
+connect to it. You can unify this behaviour by adding the MDStudio haddock service to the MDStudio service environment as:
+
+    MDStudio/docker-compose.yml:
+        
+        services:
+           mdstudio_haddock:
+              image: mdstudio/mdstudio_haddock
+              links:
+                - crossbar
+              environment:
+                - CROSSBAR_HOST=crossbar
+              volumes:
+                - ${WORKDIR}/mdstudio_haddock:/tmp/mdstudio/mdstudio_haddock
+
+And optionally add `mdstudio_haddock` to MDStudio/core/auth/settings.dev.yml for automatic authentication and 
+authorization at startup.
+
+### Install option 2 custom build Docker container
+You can custom build the MDStudio haddock Docker container by cloning the MDStudio_haddock GitHub repository and run:
+
+    docker build MDStudio_haddock/ -t mdstudio/mdstudio_haddock
+
+After successful build of the container follow the steps starting from `docker run` in install option 1.
+
+### Install option 3 standalone deployment of the service
+If you prefer a custom installation over a (pre-)build docker container you can clone the MDStudio_haddock GitHub
+repository and install `mdstudio_haddock` locally as:
+
+    pip install (-e) mdstudio_haddock/
+
+Followed by:
+
+    ./entry_point_mdstudio_haddock.sh
+
+or
+
+    export MD_CONFIG_ENVIRONMENTS=dev,docker
+    python -u -m mdstudio_haddock
+
 ## Acknowledgment
 
 This project has been developed in the Computational Structural Biology group of Utrecht University.