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encore.cluster is very slow.

khoroshyy asked Nov 13, 2024 in Q&A · Unanswered

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Reading [ pairs ] section of gromacs topology

roshan2004 asked Nov 11, 2024 in Q&A · Unanswered

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Question about the .principal_axes() outputs. Conflicts with document?

XuyangTsin asked Nov 5, 2024 in Q&A · Unanswered

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Validate correctness of MDAnalysis selection command without the universe present

marinegor started Oct 27, 2024 in General

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Calculate distance between periodic images

H-EKE asked Oct 25, 2024 in Q&A · Unanswered

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current registry failures when testing agains MDAnalysis develop

orbeckst started Oct 22, 2024 in MDAKit Discussions

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How to convert XYZ atom coordinate data in double precision (16 decimal places) to create TRR for use with Gromacs?

paul31 asked Oct 18, 2024 in Q&A · Answered

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Strange Hydrogen Bonds from a GROMACS Trajectory.

hariseldon99 asked Oct 8, 2024 in Q&A · Closed · Unanswered

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MDAnalysis Universe error on PSF files

mackevinbraza asked Oct 2, 2024 in Q&A · Unanswered

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a coarse-grained model that shields two adjacent beads (1-2 and 1-3 interactions) within the same chain

yingyingwukim started Sep 24, 2024 in General

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RDF was calculated by shielding three adjacent beads within the same chain

yingyingwukim asked Sep 20, 2024 in Q&A · Closed · Answered

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Unable to use MDAnalysis on my LAMMPS datafile and coordinate dump file
format-LAMMPS
wisecashew started Sep 23, 2024 in General

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Cannot read dcd file from MDAnalysis in CHARMM

uroehrig asked Sep 19, 2024 in Q&A · Answered

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Using MDA for ellipsoidal particles in LAMMPS and the new additional_columns option.

jacob-votava started Sep 17, 2024 in General

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MDAnalysis is hiring! (Technical Writer)

jennaswa announced Sep 6, 2024 in Announcements

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How to calculate RDF by shielding three adjacent beads within the same chain

yingyingwukim started Sep 8, 2024 in GSoC Discussions

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Problems when concatenating trajectories.

FezokaTurbo asked Aug 6, 2024 in Q&A · Unanswered

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MDAnalysis AtomGroup gets overwritten instead of concatenated

aam-10 asked Jun 29, 2024 in Q&A · Unanswered

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Number of hydrogen bonds

horlust asked Aug 26, 2024 in Q&A · Unanswered

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How can I calculated centre of mass rdf of aromatic ring from any peptide which containing aromatic ring using code and selecting atom of that ring?

Python-hub-crypto asked Sep 5, 2024 in GSoC Q&A · Unanswered

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Water inside protein

jacopo382 started Aug 30, 2024 in GSoC Discussions

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[CI] azure runners are flaky — remove them?
Continuous Integration
orbeckst started Aug 24, 2024 in Development

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Invitation to Participate in the 2024 MDAnalysis Community Survey

jennaswa announced Aug 1, 2024 in Announcements

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.bcif Reader in the works?

rbdavid started Aug 7, 2024 in Development

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Unwrap function is making the iterations take way too long time. Help!

FezokaTurbo asked Jul 23, 2024 in Q&A · Answered

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