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@MDU-PHL

Microbiological Diagnostic Unit Public Health Laboratory

Australian national reference laboratory for Salmonella, Listeria and EHEC.

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  1. abritamr abritamr Public

    A pipeline for running AMRfinderPlus and collating results into functional classes

    Python 71 14

  2. bohra bohra Public

    A pipeline for bioinformatics analysis of bacterial genomes

    Nextflow 19 4

  3. meningotype meningotype Public

    In silico serotyping, finetyping and Bexsero antigen sequence typing of Neisseria meningitidis

    Python 11 7

  4. emmtyper emmtyper Public

    Forked from Andre-Tan/EmMAIL

    emm Automatic Isolate Labeller

    Jupyter Notebook 10 4

  5. pango-collapse pango-collapse Public

    app to collapse Pango lineages for reporting

    Python 10 1

  6. LisSero LisSero Public

    In silico serotype prediction for Listeria monocytogenes

    Python 7 9

Repositories

Showing 10 of 50 repositories
  • pango-watch Public
    MDU-PHL/pango-watch’s past year of commit activity
    HTML 1 3 2 0 Updated Nov 15, 2024
  • github-watch Public
    MDU-PHL/github-watch’s past year of commit activity
    Python 0 1 2 0 Updated Nov 14, 2024
  • tbtamr Public

    AMR inference for Mtb - cousin to abriTAMR

    MDU-PHL/tbtamr’s past year of commit activity
    Python 4 GPL-3.0 2 3 1 Updated Oct 23, 2024
  • mutamr Public

    stripped down tool for generation of annotated vcf from paired-end reads

    MDU-PHL/mutamr’s past year of commit activity
    Python 0 GPL-3.0 0 0 0 Updated Oct 3, 2024
  • emmtyper Public Forked from Andre-Tan/EmMAIL

    emm Automatic Isolate Labeller

    MDU-PHL/emmtyper’s past year of commit activity
    Jupyter Notebook 10 GPL-3.0 5 12 1 Updated Sep 16, 2024
  • ngmaster Public

    In silico multi-antigen sequence typing for Neisseria gonorrhoeae (NG-MAST)

    MDU-PHL/ngmaster’s past year of commit activity
    Python 6 GPL-3.0 5 10 2 Updated Sep 16, 2024
  • himal_scripts Public

    Some scripts for MDU data

    MDU-PHL/himal_scripts’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Sep 11, 2024
  • abritamr Public

    A pipeline for running AMRfinderPlus and collating results into functional classes

    MDU-PHL/abritamr’s past year of commit activity
    Python 71 14 7 3 Updated Aug 19, 2024
  • hicap Public Forked from scwatts/hicap

    👋🎓 in silico typing of the H. influenzae cap locus

    MDU-PHL/hicap’s past year of commit activity
    Python 0 GPL-3.0 4 0 0 Updated Jul 2, 2024
  • bohra Public

    A pipeline for bioinformatics analysis of bacterial genomes

    MDU-PHL/bohra’s past year of commit activity
    Nextflow 19 GPL-3.0 4 23 (2 issues need help) 0 Updated Jun 28, 2024
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