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tsalo committed Aug 1, 2024
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5 changes: 1 addition & 4 deletions _config.yml
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# in the templates via {{ site.myvariable }}.

title: Open Multi-Echo Datasets
email: salot@pennmedicine.upenn.edu
description: >- # this means to ignore newlines until "baseurl:"
description: >-
A summary of available open multi-echo fMRI datasets
baseurl: "/open-multi-echo-data" # the subpath of your site, e.g. /blog
url: "https://me-ica.github.io" # the base hostname & protocol for your site, e.g. http://example.com
twitter_username: jekyllrb
github_username: jekyll

# Build settings
remote_theme: pages-themes/minimal@v0.2.0
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46 changes: 46 additions & 0 deletions _layouts/dataset.html
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---
layout: default
---

<h1>{{ page.title }}</h1>

<table>
<thead>
<tr>
<th>Website</th>
<th>Magnetic Field Strength</th>
<th>Number(s) of Echoes</th>
<th>Extras</th>
</tr>
</thead>
<tbody>
{% for post in site.categories.dataset %}
<tr>
<td><a href="{{ post.website }}">Link</a></td>
<td>{{ post.scanner }}</td>
<td>{{ post.echoes | join: ", " }}</td>
<td>
<ul>
{% for extra in post.extras %}
<li>
{% if extra == "asl" %}
Concurrent ASL
{% elsif extra == "complex" %}
Complex-valued BOLD
{% elsif extra == "norf" %}
Noise scans
{% elsif extra == "physio" %}
Concurrent physiological monitoring
{% elsif extra == "single-echo" %}
Comparison single-echo BOLD
{% endif %}
</li>
{% endfor %}
</ul>
</td>
</tr>
{% endfor %}
</tbody>
</table>

{{content}}
2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds000210.md
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---
layout: post
layout: dataset
title: "Multi-echo fMRI replication sample of autobiographical memory, prospection and theory of mind reasoning tasks"
categories: dataset
website: https://openneuro.org/datasets/ds000210
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds000216.md
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---
layout: post
layout: dataset
title: "Multiband Multi-Echo Imaging of Simultaneous Oxygenation and Flow Timeseries for Resting State Connectivity"
categories: dataset
website: https://openneuro.org/datasets/ds00016
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds000254.md
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---
layout: post
layout: dataset
title: "Multiband Multi-Echo Simultaneous ASL/BOLD for task-induced functional MRI"
categories: dataset
website: https://openneuro.org/datasets/ds000254
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds000258.md
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---
layout: post
layout: dataset
title: "Multi-echo Cambridge"
categories: dataset
website: https://openneuro.org/datasets/ds000258
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds001491.md
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---
layout: post
layout: dataset
title: "Valence processing differs across stimulus modalities"
categories: dataset
website: https://openneuro.org/datasets/ds001491
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds002156.md
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---
layout: post
layout: dataset
title: "Multi-echo masking test dataset"
categories: dataset
website: https://openneuro.org/datasets/ds002156
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds002278.md
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---
layout: post
layout: dataset
title: "Dense Investigation of Variability of Affect (DIVA)"
categories: dataset
website: https://openneuro.org/datasets/ds002278
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds003192.md
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---
layout: post
layout: dataset
title: "EuskalIBUR"
categories: dataset
website: https://openneuro.org/datasets/ds003192
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds003592.md
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---
layout: post
layout: dataset
title: "Neurocognitive aging data release with behavioral, structural, and multi-echo functional MRI measures"
categories: dataset
website: https://openneuro.org/datasets/ds003592
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds003643.md
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---
layout: post
layout: dataset
title: "Le Petit Prince"
categories: dataset
website: https://openneuro.org/datasets/ds003643
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds003823.md
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---
layout: post
layout: dataset
title: "Heart rate variability biofeedback training and emotion regulation"
categories: dataset
website: https://openneuro.org/datasets/ds003823
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds004499.md
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---
layout: post
layout: dataset
title: "Multi-echo simultaneous multislice fMRI dataset: Effect of acquisition parameters on fMRI data"
categories: dataset
website: https://openneuro.org/datasets/ds004499
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds004627.md
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---
layout: post
layout: dataset
title: "Characterization and Treatment of Adolescent Depression (CAT-D)"
categories: dataset
website: https://openneuro.org/datasets/ds004627
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds004662.md
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---
layout: post
layout: dataset
title: "Denoising task-correlated head motion from motor-task fMRI data with multi-echo ICA"
categories: dataset
website: https://openneuro.org/datasets/ds004662
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds004787.md
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---
layout: post
layout: dataset
title: "NIMH METeR"
categories: dataset
website: https://openneuro.org/datasets/ds004787
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds004935.md
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---
layout: post
layout: dataset
title: "Multivariate Assessment of Inhibitory Control in Youth: Links with Psychopathology and Brain Function Dataset"
categories: dataset
website: https://openneuro.org/datasets/ds004935
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds005085.md
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---
layout: post
layout: dataset
title: "Sequence pilot: multiecho and multiband fMRI"
categories: dataset
website: https://openneuro.org/datasets/ds005085
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds005118.md
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---
layout: post
layout: dataset
title: "Weill Cornell Medicine Multi-echo (WCM-ME) Dataset"
categories: dataset
website: https://openneuro.org/datasets/ds005118
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds005123.md
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---
layout: post
layout: dataset
title: "Social Reward and Aging: A Preliminary Multi-echo fMRI and Diffusion Dataset"
categories: dataset
website: https://openneuro.org/datasets/ds005123
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds005250.md
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---
layout: post
layout: dataset
title: "Single-echo/multi-echo comparison pilot"
categories: dataset
website: https://openneuro.org/datasets/ds005250
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-ds005264.md
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---
layout: post
layout: dataset
title: "SoCal Kinesia and Incentivization for Parkinson's Disease (SKIP): Ultra-High Field Functional Connectivity"
categories: dataset
website: https://openneuro.org/datasets/ds005264
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2 changes: 1 addition & 1 deletion _posts/2024-08-01-mhq3f.md
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---
layout: post
layout: dataset
title: "MICA-PNI: Precision NeuroImaging and Connectomics"
categories: dataset
website: https://osf.io/mhq3f/
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2 changes: 1 addition & 1 deletion _posts/template.md
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---
layout: post
layout: dataset
title: ""
categories: dataset
website:
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