Upload Python Package to PyPI and Deploy Documentation to Read the Docs #18

	name: Upload Python Package to PyPI and Deploy Documentation to Read the Docs

	on:
	release:
	types: [created]

	jobs:
	pypi-publish:
	name: Publish release to PyPI and Deploy Documentation
	runs-on: ubuntu-latest

	permissions:
	id-token: write
	contents: read

	steps:
	- name: Checkout repository
	uses: actions/checkout@v2

	- name: Set up Python
	uses: actions/setup-python@v2
	with:
	python-version: "3.12"

	- name: Install Miniconda
	uses: conda-incubator/setup-miniconda@v2
	with:
	auto-update-conda: true

	- name: Initialize Conda
	run: \|
	conda init bash
	shell: bash

	- name: Create Conda environment
	run: \|
	conda env create -f environment.yaml

	- name: Activate Conda environment
	run: \|
	source ~/.bashrc
	conda activate MED3pa
	shell: bash

	- name: Install dependencies
	run: \|
	python -m pip install --upgrade pip
	pip install setuptools wheel setuptools-scm sphinx sphinx_rtd_theme

	- name: Clean dist directory
	run: \|
	rm -rf dist/

	- name: Build package
	run: \|
	python setup.py sdist bdist_wheel

	- name: Publish package distributions to PyPI
	uses: pypa/gh-action-pypi-publish@v1.5.1 # Updated to the latest version
	with:
	password: ${{ secrets.PYPI_API_TOKEN }}

	- name: Build and deploy documentation to Read the Docs
	run: \|
	pip install sphinx
	cd docs
	make html
	sphinx-build -b html . _build/html
	env:
	READTHEDOCS: "True" # Ensure that the Read the Docs environment variable is set

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