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Update visualization.md
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sbryngelson authored Nov 5, 2024
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Expand Up @@ -13,12 +13,10 @@ Nevertheless, the installation and configuration of Paraview can be environment-
The user can launch Paraview and open the index files under `/silo_hdf5/root`.
Once the database is loaded, flow field variables contained in the database can be added to the render view.
Further information on Paraview can be found in its [documentation](https://docs.paraview.org/en/latest/).
The figure below shows the iso-contour of the liquid void fraction (`alpha`) in the database generated by the example case `3D_sphbubcollapse`.
The figure below shows the iso-contour of the liquid void fraction (`alpha1`) in the database generated by the example case `3D_sphbubcollapse`.

![](../res/paraview.png)

*Iso-contour of the liquid void fraction (`alpha1`) in the database generated by example case `3D_sphbubcollapse`*

### Visualizing data in cylindrical coordinates

Visualizing data in cylindrical coordinates requires a coordinate transformation of the raw data in the database file.
Expand Down Expand Up @@ -127,7 +125,7 @@ Submitted batch job <job #>
Waiting for ParaView server to start. This may take several minutes ...
```

When it's done initializing, you should see a dialogue with some recommended next steps numbered 1-4.
When initializing is done, you should see a dialogue with some recommended next steps, numbered 1-4.
Below is a slightly altered version of that dialogue:

1) Create the appropriate port forwarding for your local ParaView session to connect with.
Expand All @@ -136,7 +134,7 @@ Below is a slightly altered version of that dialogue:
* `ssh -L 8722:<nodeIdentifier>:53723 <paceSystemIdentifier>`

2) Once you have `Paraview5.11.0` on your machine, select `File -> Connect..` to open the remote connection dialogue box.
* Double-click the existing configuration if you've already set up the pace connection.
* Double-click the existing configuration if you've already set up the PACE connection.
* Click `Add Server` If you have not set up the PACE connection.
This will create a new dialogue box where you can specify a configuration name and set the `Port` to `8722`.
Once this is done, click `configure` and then `save` on the next dialogue box.

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