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+# Introduction to the module
+
+In this module you will learn how to analyse bacteriophage sequences with computational approaches. The theoretical part will be covered in the mornings and include a series of questions. Document the questions and answers in a lab book. These will also be considered in your final evaluation. The evaluation will be composed of:
+
+- Performance in the dry lab, lab journal (60%)
+- Presentation of the final project (40%)
+
+To write a good lab book be attentive to:
+
+- Write in the lab book every day, documenting your tasks;
+- Structure it in cronological order, so that each section corresponds to a different day.
+
+To keep up with a good organization, in your practical experiments, use a logical order for naming your folders. For instance: 0_download, 1_quality_evaluation, 2_assembly. Always name them in your lab book, so that you can find your files while reading the lab book in the future.
+
+# Lab Book
+
+Documenting your work is crucial in Computational Biology/Bioinformatics. This way you can make sure your work is reproducible, 
+you can transfer text to other documents, such as reports or papers and you can send it to collegues, so that they can access your work.   
+
+You are required to write a Lab Book in markdown for this module, which will count as part of your evaluation. If you want, you can start a GITHub repository for the course and write your lab book there.  References:
+
+- https://commonmark.org/help/
+- https://www.markdownguide.org/basic-syntax/
+
+You should divide the lab book into sections (days) and add subsections for different tasks. 
+Each subsection should have a meaningful title, e. g. "Documenting module *Viromics-Bioinformatics*", "Downloading phage sequences", "Evaluating sequence quality". Any relevant information should be included, such as websites used in searches, folders 
+where you can find files, tool names and versions and bibliographic references. An example can be seen in the link: 
+https://github.com/waltercostamb/course_viral-microbiology/blob/main/tutorials/lab-book.pdf. Start your lab book today and write on it 
+whenever necessary during the module. In the last day, send a copy to your advisor.    
+
+The paper "Ten Simple Rules for a Computational Biologist’s Laboratory Notebook", by Santiago Schnell of 2015 offers interesting insights: https://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1004385 Most relevant are rules 4, 6 and 10. Keeping a hard copy of your lab book is not necessary, however make sure you have it backed up. 
+
+## Supplementary reference
+
+- "Ten Simple Rules for Reproducible Computational Research", by Geir Sandve and collaborators, 2013: https://app.dimensions.ai/details/publication/pub.1022987921
+
+# Access to draco
+
+[Draco](https://wiki.uni-jena.de/pages/viewpage.action?pageId=22453002) is a high-performance cluster created and maintained by the Universitätsrechenzentrum. It is [available for members of Thuringian Universities](http://sternb.gitpages.tpi.uni-jena.de/draco-101-2023-01/#5). To log in, you can use [ssh](http://sternb.gitpages.tpi.uni-jena.de/draco-101-2023-01/#15): 
+
+```
+ssh <fsuid>@login1.draco.uni-jena.de
+```
+