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V 0.1.0 GPLOOP and CGPA implementations #90

Merged
merged 280 commits into from
Nov 27, 2023
Merged

V 0.1.0 GPLOOP and CGPA implementations #90

merged 280 commits into from
Nov 27, 2023
This pull request is big! We’re only showing the most recent 250 commits.

Commits on Oct 6, 2023

  1. Clang format

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  2. clang format longer lines

    @ssitu
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  3. clang format longer lines

    @ssitu
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  4. Merge pull request #18 from amantham20/add-gp-unit-tests 

    Remove agent from targets
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  5. Initialized a new Linear GP Agent

    @Rajmeet
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  6. Remove input_indices member

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  7. Function pointer constructor for GraphNode

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  8. Replace derived nodes with function pointers

    @ssitu
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  9. Cartesian graph construction test

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  10. Refactoring 

    GPGraph.hpp separated into GraphNode.hpp, Graph.hpp, GraphBuilder.hpp
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Commits on Oct 7, 2023

  1. Merge branch 'Dev' into GraphPrototype

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  2. Remove duplicate group7 directory

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  3. Allow for changing action space

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Commits on Oct 8, 2023

  1. Remove action map from GraphBuilder tests

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Commits on Oct 9, 2023

  1. Merge branch 'Dev' into Aman's-Workspace

    @amantham20
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  2. Merge branch 'Aman's-Workspace_Sensors' into Aman's-Workspace_Registars

    @amantham20
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  3. registars

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  4. added tests for registers

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Commits on Oct 10, 2023

  1. Merge branch 'LinearGPAgent' into Jason's-workspace

    @amantham20
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  2. updates to testing with Ctest

    @amantham20
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  3. changed the location for register tests

    @amantham20
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  4. Update CMakeLists.txt

    @amantham20
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  5. Update CMakeLists.txt

    @amantham20
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  6. Delete source/core/Logging.hpp

    @amantham20
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  7. added sensors for up left down right and added documentation 

    added sensors for Left Right up and down

added functions for up left right and down.

updated sensors with more details and docs
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  8. Merge branch 'Dev' into Aman's-Workspace_Sensors

    @amantham20
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  9. updated with tests

    @amantham20
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  10. change the order for check to stop runtime errors

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  11. Added genotype for CGP, can be mutated

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  12. Clang format

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  13. added n debug

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  14. Update agent.hpp

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  15. Merge pull request #15 from amantham20/Aman's-Workspace_Sensors 

    added sensors for Left Right up and down
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  16. Select action functionality extended

    JasonMSeguin committed Oct 10, 2023
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  17. added documentation

    @amantham20
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  18. Merge pull request #19 from amantham20/Aman's-Workspace_Registars 

    registers to store data for agents.
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  19. Merge branch 'Dev' into Jason's-workspace

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  20. Merge branch 'Aman's-Workspace_Sensors' into Dev

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  21. Merge branch 'Dev' into Jason's-workspace

    @amantham20
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  22. Updated default action result to be 0

    @Rajmeet
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  23. Added a function to map string to SensorDirection

    @Rajmeet
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  24. Initialized sensors to LGPAgent

    @Rajmeet
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  25. Here's a contributor 

    Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
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  26. Added sensors to actionList 

    Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
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  27. Merge branch 'Jason's-workspace' of https://github.com/amantham20/CSE… 

    …491_GP_Group7 into Jason's-workspace
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  28. Merge branch 'Dev' of https://github.com/amantham20/CSE491_GP_Group7 … 

    …into Dev
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  29. Merge branch 'Jason's-workspace' into Dev

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  30. compilers gonna be mad! :( 

    Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
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  31. Merge branch 'main' into Thrid-Deliverable

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  32. Mastering the Art of Clang Fu 

    Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
Co-Authored-By: Rajmeet Singh Chandok <rajmeetchandok@gmail.com>
Co-Authored-By: ssitu <57548627+ssitu@users.noreply.github.com>
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Commits on Oct 11, 2023

  1. updates to core and gp ctests working directory 

    Committing code so fresh, it might just need a shower! 🚿💻 #CodeCleanliness

Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
Co-Authored-By: Rajmeet Singh Chandok <rajmeetchandok@gmail.com>
Co-Authored-By: ssitu <57548627+ssitu@users.noreply.github.com>
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    4 people committed Oct 11, 2023
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  2. added compile header

    @amantham20
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  3. Add a vector for the function set

    @ssitu
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  4. Add pragma once and getters

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  5. Build cartesian graphs from genotype

    @ssitu
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  6. Remove print statements

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  7. removed changes in main

    @amantham20
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  8. updated coments

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  9. Added caching of node outputs

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  10. Reduce computation of default graph

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  11. Only invalidate cache when setting input nodes to a different value

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  12. Include ranges

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  13. Adjust default random graph

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  14. Comment out unused functions and variables for now

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  15. Merge branch 'Dev' into GraphPrototype

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Commits on Oct 12, 2023

  1. Add struct for graph parameters, tests for CGPAgent

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  2. Forgot to initialize the decision graph

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  3. Rename main for cgp for clarity

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Commits on Oct 13, 2023

  1. updated flags for release

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Commits on Oct 14, 2023

  1. updated using the google clang format standard

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Commits on Oct 15, 2023

  1. Merge branch 'Dev' into Aman's-Workspace

    @amantham20
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  2. review suggested updates to sensors class

    @amantham20
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Commits on Oct 17, 2023

  1. LGPAgent - Operations implemented

    JasonMSeguin committed Oct 17, 2023
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  2. Merge branch 'Dev' into GraphPrototype

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Commits on Oct 18, 2023

  1. Merge branch 'Jason's-workspace' into Dev 

    Co-Authored-By: JasonMSeguin <143659605+JasonMSeguin@users.noreply.github.com>
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  2. Export/import genotypes to/from string

    @ssitu
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  3. markdown documentation

    @amantham20
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  4. fixes for registers

    @amantham20
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  5. Update Group7_GPA.md

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  6. Only get output from nodes used in node function

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  7. Cleaned up LGPAgent a little bit

    JasonMSeguin committed Oct 18, 2023
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  8. Update Group7_GPA.md

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  9. Merge branch 'Dev' of https://github.com/amantham20/CSE491_GP_Group7 … 

    …into Dev
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  10. Change char to symbol in main

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  11. Clang format use default indent level = 2

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  12. base64 support for doubles

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Commits on Oct 19, 2023

  1. Fixes from core code

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  2. print for direct in agent

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  3. update on notes

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  4. printing of generated seq

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  5. Moved attributes from LPGA to CoreObject

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  6. Removed GP_Classes requirement

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  7. renamed GPAgent

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  8. Rename GP agent

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  9. Update Group7_GPA.md

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  10. Code clean up refactor

    @amantham20
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  11. updated tests for register

    @amantham20
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  12. Google stand refactor prettify

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  13. updated tests

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  14. Added default node output to genotype

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  15. Add test for default output in genotype

    @ssitu
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  16. Refactor mutations

    @ssitu
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  17. Use const iterators

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  18. Forgot to include functional

    @ssitu
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  19. Rename GPAgent to resolve conflict, will unify later

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  20. Merge branch 'Dev' into GraphPrototype

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Commits on Oct 20, 2023

  1. Output mutations can be additive

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    ssitu committed Oct 20, 2023
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  2. Added a default mutate method

    @ssitu
    ssitu committed Oct 20, 2023
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Commits on Oct 25, 2023

  1. Remove unused GraphNode member

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    ssitu committed Oct 25, 2023
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  2. Remove virtual from GraphNode.GetOutput

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    ssitu committed Oct 25, 2023
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  3. Docs and quick fixes

    @ssitu
    ssitu committed Oct 25, 2023
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  4. Method chaining, and cleanup of genotype tests

    @ssitu
    ssitu committed Oct 25, 2023
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  5. Clean up

    @ssitu
    ssitu committed Oct 25, 2023
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Commits on Oct 26, 2023

  1. Docs

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    ssitu committed Oct 26, 2023
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  2. Remove virtual from graph node destructor

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    ssitu committed Oct 26, 2023
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Commits on Oct 30, 2023

  1. Use emplace back

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    ssitu committed Oct 30, 2023
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  2. Use mutate default in test case

    @ssitu
    ssitu committed Oct 30, 2023
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  3. Simplify code and test cases

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    ssitu committed Oct 30, 2023
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  4. Clarify some test cases

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    ssitu committed Oct 30, 2023
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Commits on Nov 1, 2023

  1. Merge branch 'Dev' into GraphPrototype

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  2. updated code

    @amantham20
    amantham20 committed Nov 1, 2023
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Commits on Nov 3, 2023

  1. MultiThreadingn enabled

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  2. added a simple fitness function

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  3. Merge branch 'GraphPrototype' into GPLoop-amanXsimon-CGPA

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  4. Remove unused function GraphNode.GetInput

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  5. Add a mutate function to GPAgent

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  6. Update tests

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  7. refactored CGPA 

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  8. Added base virtual functions for GP agent 

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  9. Fixed Genotype 

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  10. updated GP runner 

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  11. created a new maze 

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  12. udpated GP loop 

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Commits on Nov 4, 2023

  1. reformat 

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  2. updates to list

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Commits on Nov 6, 2023

  1. Add method for copying agent behaviors

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  2. renameworld

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  3. Remove GPU multi threading

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    amantham20 committed Nov 6, 2023
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  4. Update .gitmodules

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  5. updates

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  6. Merge branch 'GraphPrototype' into GPLoop-amanXsimon-CGPA

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  7. Fix Mutate only happening on an empty genotype

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  8. Move default genotype creation to Initialize

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  9. updated working gp loop

    @amantham20
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  10. Update default_maze.grid

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  11. Merge branch 'GraphPrototype' into GPLoop-amanXsimon-CGPA

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  12. update a lot of things

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Commits on Nov 7, 2023

  1. Fix base64 for doubles < 1; Various fixes

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  2. updated

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  3. wokring part of XML

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  4. Merge branch 'Jason's-workspace' into GPLoop-amanXsimon-CGPA

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  5. Merge branch 'GraphPrototype' into GPLoop-amanXsimon-CGPA

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  6. more and more changes

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Commits on Nov 8, 2023

  1. we good -TMG

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  2. updates to a new agent to test

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  3. updates of xml serialization

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  4. Merge branch 'development' into xml-Serialize-Deserialize

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  5. added memory include

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  6. added another include 'algorithm' 🤞

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  7. updated tests 😉

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Commits on Nov 10, 2023

  1. Some changes to gp loop

    @ssitu
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  2. Merge branch 'upsteam-Dev' into GPLoop-amanXsimon-CGPA

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  3. more and more changes and merge fixes 

    Co-Authored-By: ssitu <57548627+ssitu@users.noreply.github.com>
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  4. Moved files around like a game of musical chairs. Nobody's left stand… 

    …ing!

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  5. commented out the reset previous state 

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  6. Merge branch 'xml-Serialize-Deserialize' into GPLoop-amanXsimon-CGPA

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  7. Saved the XML file from the digital Bermuda Triangle 🌊. We won't lose… 

    … it again!

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  8. removed code format for Github actions

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  9. Add include and override pure virtual method

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  10. More efficient ull to b64

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  11. working with time set for logfiles

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  12. updated saving with multi saving data

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  13. removed the problamatic files

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  14. added files names

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  15. Change back default maze

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  16. Remove sstream

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Commits on Nov 11, 2023

  1. Expanded function set

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  2. Improvements to cgp genotype

    @ssitu
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  3. Update test case from genotype change

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  4. 10000 generations test run (Better fitness function)

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Commits on Nov 12, 2023

  1. Replace operator[] with at

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Commits on Nov 13, 2023

  1. More efficient B2ToB64

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  2. Updated xml init

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  3. updated to ignore the long files

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  4. Delete savedata/GPAgent/AgentData_2023-11-10__19_02_19_10000_Generati… 

    …ons.xml
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  5. Merge branch 'Temp2' into GPLoop-amanXSimon-CGPA

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  6. Back to ../../

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  7. Merge branch 'GPLoop-amanXSimon-CGPA' of https://github.com/amantham2… 

    …0/CSE491_GP_Group7 into GPLoop-amanXSimon-CGPA
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  8. refactor and working updates

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  9. Merge branch 'GPLoop-amanXSimon-CGPA' of https://github.com/amantham2… 

    …0/CSE491_GP_Group7 into GPLoop-amanXSimon-CGPA
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  10. Muti Threaded Spaghetti Code Feista? More like Thread-guetti Code! Mu… 

    …lti-threading madness unleashed. all you can eat threads
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  11. Switch from map to constexpr array

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Commits on Nov 14, 2023

  1. updated to only run GP when required

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  2. Merge branch 'GPLoop-amanXSimon-CGPA' of https://github.com/amantham2… 

    …0/CSE491_GP_Group7 into GPLoop-amanXSimon-CGPA
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  3. updated to include p threads

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  4. added timing for each generation

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  5. more documentation

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Commits on Nov 15, 2023

  1. Implemented Mutate, Copy, and tests for LGPA

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  2. Rename GPAgent_ to GPAgentBase

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Commits on Nov 16, 2023

  1. Remove try catch block for GraphNode functions

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  2. Use random numbers from world

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  3. Add mock world into Graph tests for mutate

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  4. Add missing mock world and remove a redundant test

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  5. Add operator<< to genotype for std::ostream

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Commits on Nov 17, 2023

  1. Use raw ptr instead of weak_ptr for output ptr

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  2. Seed the worlds in GP loop

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  3. Removed early save data files

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  4. added more docs for GP

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  5. updated ignore for savedata

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  6. added coverage profiling

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  7. reformated code

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    amantham20 committed Nov 17, 2023
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  8. added savedata back to for the program to compile properly

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    amantham20 committed Nov 17, 2023
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  9. updated white spaces in cmake and reformated code

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    amantham20 committed Nov 17, 2023
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  10. updated and commented out par

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    amantham20 committed Nov 17, 2023
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  11. Merge branch 'GPLoop-amanXSimon-CGPA' into Jason's-workspace

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    amantham20 committed Nov 17, 2023
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  12. changed GPAgent_ to GPAgentBase in LPAgent

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    amantham20 committed Nov 17, 2023
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  13. Aman did not return from non-void function 😄

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    ssitu committed Nov 17, 2023
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  14. Problems with memory leaks

    @amantham20
    amantham20 committed Nov 17, 2023
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  15. Merge branch 'Jason's-workspace' into GPLoop-amanXSimon-CGPA

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    amantham20 committed Nov 17, 2023
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Commits on Nov 20, 2023

  1. more documentation and fixes

    @amantham20
    amantham20 committed Nov 20, 2023
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Commits on Nov 21, 2023

  1. Add macro to opt-in parallel std algorithms

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    ssitu committed Nov 21, 2023
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  2. Add docs to GraphBuilder class

    @ssitu
    ssitu committed Nov 21, 2023
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  3. Negative values were getting clamped to zero

    @ssitu
    ssitu committed Nov 21, 2023
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  4. Added sensors to CGPAgent

    @ssitu
    ssitu committed Nov 21, 2023
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Commits on Nov 22, 2023

  1. Add reciprocal function

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    ssitu committed Nov 22, 2023
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  2. Reduce size of default CGP graph

    @ssitu
    ssitu committed Nov 22, 2023
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  3. Each agent has their separate random number generator

    @ssitu
    ssitu committed Nov 22, 2023
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  4. Set seed of agents and use random seed if seed is 0

    @ssitu
    ssitu committed Nov 22, 2023
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  5. Delete Makefile

    @ssitu
    ssitu committed Nov 22, 2023
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  6. Cleaned up compiler warnings

    @ssitu
    ssitu committed Nov 22, 2023
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Commits on Nov 25, 2023

  1. Exorcised undefined behaviors and befriended CMake for memory sanitiz… 

    …ing - it's like spring cleaning, but with more code and less sneezing!
    @amantham20
    amantham20 committed Nov 25, 2023
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  2. Added mutation of graph structures

    @ssitu
    ssitu committed Nov 25, 2023
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  3. added a progress bar

    @amantham20
    amantham20 committed Nov 25, 2023
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  4. Merge branch 'GPLoop-amanXSimon-CGPA' of https://github.com/amantham2… 

    …0/CSE491_GP_Group7 into GPLoop-amanXSimon-CGPA
    @amantham20
    amantham20 committed Nov 25, 2023
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  5. updated pushback

    @amantham20
    amantham20 committed Nov 25, 2023
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  6. refactor

    @amantham20
    amantham20 committed Nov 25, 2023
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Commits on Nov 26, 2023

  1. Documentation and sanitization

    @amantham20
    amantham20 committed Nov 26, 2023
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  2. Refactored

    @amantham20
    amantham20 committed Nov 26, 2023
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  3. updated grid numbering

    @amantham20
    amantham20 committed Nov 26, 2023
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  4. Our save data just graduated from the School of Document Agnosticism.… 

    … Summa Cum Laude in Flexibility! 🎓🎉

updated and made the save data better with making it document agnostic
    @amantham20
    amantham20 committed Nov 26, 2023
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  5. MultiPostions works

    @amantham20
    amantham20 committed Nov 26, 2023
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  6. updated to printing

    @amantham20
    amantham20 committed Nov 26, 2023
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  7. formated the fitness scores

    @amantham20
    amantham20 committed Nov 26, 2023
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  8. updated and added metatag

    @amantham20
    amantham20 committed Nov 26, 2023
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Commits on Nov 27, 2023

  1. Merge branch 'development' into GPLoop-amanXSimon-CGPA

    @amantham20
    amantham20 authored Nov 27, 2023
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  2. updated and added more documentation

    @amantham20
    amantham20 committed Nov 27, 2023
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  3. Merge branch 'development' into GPLoop-amanXSimon-CGPA

    @amantham20
    amantham20 committed Nov 27, 2023
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  4. updated the maze back to default

    @amantham20
    amantham20 committed Nov 27, 2023
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  5. removed spacing changed removed to reflect in PR

    @amantham20
    amantham20 committed Nov 27, 2023
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  6. last spacing change I promise

    @amantham20
    amantham20 committed Nov 27, 2023
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