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OMOP CDM setup

This repository creates a basic OMOP database within a postgres docker container.

Prerequisites

  • Docker (please find installation here)
  • Command-line tools:
    • curl
    • unzip (only needed to unzip the downloaded OMOP terminology files)

Setup

Please download/checkout this repository, and run the ./setup.sh file.

How to use it?

After executing the setup, there should be two docker containers:

  • Postgres database
  • Postgres web-interface

To launch the webinterface, go to http://localhost:5555 and sign in with the following credentials:

Afterwards, add the postgres database server (Servers -> right-click "Create" -> "Server"). Use the following information to make the server connnection:

  • hostname: postgres
  • username: postgres
  • password: postgres

After connecting to the database server, there should be an omop database available.

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