CWL workflows for Data2Services

See d2s.semanticscience.org for detailed documentation on using the d2s Command Line Interface.

The Common Workflow Language is used to describe workflows to transform heterogeneous structured data (CSV, TSV, RDB, XML, JSON) to a target RDF data model. A generic RDF is generated depending on the input data structure (AutoR2RML, xml2rdf), then SPARQL queries, defined by the user, are executed to transform the generic RDF to the target data model.

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Requirements

• Install the d2s client
• Install cwlref-runner to get cwl-runner to run workflows of Docker modules.
• Docker must be installed

sudo apt install d2s cwlref-runner

See d2s.semanticscience.org for complete documentation about the d2s CLI.

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Clone

git clone --recursive https://github.com/MaastrichtU-IDS/d2s-core.git