native_T1

Macatools · Dec 6, 2024 · 61c46c6 · 61c46c6
1 parent 20fd8f6
commit 61c46c6
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Showing 2 changed files with 3 additions and 6 deletions.
diff --git a/macapype/pipelines/prepare.py b/macapype/pipelines/prepare.py
@@ -404,21 +404,17 @@ def create_short_preparation_pipe(params, params_template={},
             crop_T1, "roi_file",
             crop_aladin_pipe, 'inputnode.native_T1')
 
-        data_preparation_pipe.connect(
-            crop_T1, "roi_file",
-            crop_aladin_pipe, 'inputnode.orig_native_T1')
-
     else:
         # connect orig_native_T1
         if "avg_reorient_pipe" in params.keys():
             data_preparation_pipe.connect(
                 av_T1, 'outputnode.std_img',
-                crop_aladin_pipe, 'inputnode.orig_native_T1')
+                crop_aladin_pipe, 'inputnode.native_T1')
 
         else:
             data_preparation_pipe.connect(
                 av_T1, 'avg_img',
-                crop_aladin_pipe, 'inputnode.orig_native_T1')
+                crop_aladin_pipe, 'inputnode.native_T1')
 
     data_preparation_pipe.connect(
         inputnode, 'indiv_params',

diff --git a/macapype/pipelines/register.py b/macapype/pipelines/register.py
@@ -539,6 +539,7 @@ def _create_remove_capsule_pipeline(name="remove_capsule_pipe", params={}):
 
     return remove_caps_pipe
 
+
 def create_crop_aladin_pipe(name="crop_aladin_pipe", params={}):
 
     reg_pipe = pe.Workflow(name=name)
Original file line number	Diff line number	Diff line change
Expand Up		@@ -539,6 +539,7 @@ def _create_remove_capsule_pipeline(name="remove_capsule_pipe", params={}):

		return remove_caps_pipe


		def create_crop_aladin_pipe(name="crop_aladin_pipe", params={}):

		reg_pipe = pe.Workflow(name=name)
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