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Fix warp t1 #232

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merged 2 commits into from
Nov 20, 2023
Merged

Fix warp t1 #232

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0438850
using native instead of warp_T1
davidmeunier79 Nov 17, 2023
f5d7ab9
change version 4.2
davidmeunier79 Nov 20, 2023
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2 changes: 1 addition & 1 deletion macapype/_version.py
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Original file line number Diff line number Diff line change
@@ -1,2 +1,2 @@

__version__ = '0.3.4'
__version__ = '0.3.4.2'
3 changes: 0 additions & 3 deletions macapype/pipelines/full_pipelines.py
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Expand Up @@ -418,9 +418,6 @@ def create_full_spm_subpipes(
old_segment_pipe = create_native_old_segment_pipe(
params_template, params=parse_key(params, "old_segment_pipe"))

seg_pipe.connect(reg, 'warp_file',
old_segment_pipe, 'inputnode.T1')

seg_pipe.connect(reg, 'inv_transfo_file',
old_segment_pipe, 'inputnode.inv_transfo_file')

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4 changes: 2 additions & 2 deletions macapype/pipelines/segment.py
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Expand Up @@ -717,7 +717,7 @@ def create_native_old_segment_pipe(params_template, params={},
# Creating inputnode
inputnode = pe.Node(
niu.IdentityInterface(
fields=['T1', 'indiv_params', "native_T1", "inv_transfo_file"]),
fields=['indiv_params', "native_T1", "inv_transfo_file"]),
name='inputnode'
)

Expand Down Expand Up @@ -769,7 +769,7 @@ def create_native_old_segment_pipe(params_template, params={},
function=gunzip),
name="unzip")

seg_pipe.connect(inputnode, 'T1', unzip, 'zipped_file')
seg_pipe.connect(inputnode, 'native_T1', unzip, 'zipped_file')

# merge_tissue_files
merge_tissue_files = pe.Node(
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