Code

Better stereo#249

Code

Merged

davidmeunier79 merged 46 commits intoMacatools:masterMacatools/macapype:masterfrom davidmeunier79:better_stereodavidmeunier79/macapype:better_stereoCopy head branch name to clipboardMar 8, 2024

+389-197

Commits

Commits on Feb 27, 2024

• use_T2 without skull_stripped version

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  b080fa3

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• print

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  aa4297a

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• keys

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  c0f756c

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• print

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  1841981

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• earlier attempt was wrong

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  ef135cd

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• no pre padding

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  e8732dc

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• resample

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• flo

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  fbfdddf

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• padded_template_head for padded_stereo_T1

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• typo

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  8c25feb

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• padded

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  285f60c

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• connect

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  f6bfb3e

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• added option use_T2 to reverse all process

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• no node_crop

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  687b344

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Commits on Feb 28, 2024

• modified to change back the T1 -> T2 after short_preparation if use_T2

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  aeda5ae

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• Merge branch 'master' into better_stereo

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  0a4d6a6

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• space

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  723d34b

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• pad_debiased removed

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  ad65be9

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• rename

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  4ef0b44

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• rename

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  38ee575

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• if padded_template_head

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• padded_template_head

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• flake8

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Commits on Feb 29, 2024

• lower resolution

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  7497e6c

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• use_T2 in crop_aladin (warning, is inverted in all short_preparation_pipe)

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  63d0f6d

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Commits on Mar 1, 2024

• stereo with optional reg_T1_to_template2 and resample_T1_pad

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  b9a02c6

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• bma-1 and bma-1_0p2mm only as templates to download

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  9b6a8ac

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• bug error template

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  94bd86d

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Commits on Mar 4, 2024

• crop_aladin_T1 with indiv_params

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  e919a74

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Commits on Mar 5, 2024

• inversion in native_T1/native_T2 for use_T2 or not

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Commits on Mar 7, 2024

• indiv_params for "reg_T1_on_template" and "reg_T1_on_template2

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  984baa4

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• native_to_stereo_pipe, inputnode.indiv_params

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  bd5658e

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• some link with indiv params for create_stereo were missing

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  5e3b713

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• "nii2mesh_brain_pipe" in params["brain_segment_pipe"].keys() in rename

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  d29f0cc

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• some subs

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  3dbfac2

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• _brain (-brain is OK)

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  8ba6286

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• new subs

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  2c3aad3

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• forcing 5tt

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  4a45b13

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• testing

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  0024303

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• brain_Segmentation

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• typo

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• debiased_brain

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• 5tt

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  61cd79f

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• test subs

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  9cd0dc7

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• restore

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• brain

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