testing if check_on_PR works properly #2


	name: Checking unit-tests, PEP8 and standard pipeline congruency

	on:

	pull_request:
	branches:
	- main


	jobs:
	build:

	runs-on: ubuntu-latest

	steps:
	- uses: actions/checkout@main
	- name: Set up Python 3.7
	uses: actions/setup-python@v1
	with:
	python-version: 3.7

	- name: Install dependencies
	run: \|
	pip install codecov pytest pytest-cov
	pip install -e .
	pip install flake8
	sudo apt-get install build-essential graphviz libgraphviz-dev
	pip install --upgrade pygraphviz graphviz

	- name: Test with pytest
	run:
	py.test --cov skullTo3d

	- name: Flake8
	run:
	flake8 --count skullTo3d

	- name: Download dataset
	run: \|
	wget --no-check-certificate --content-disposition "https://amubox.univ-amu.fr/public.php?service=files&t=swYxNZ3P6LjfqN4&download" -O skullTo3d_CI.zip
	unzip -o skullTo3d_CI.zip -d skullTo3d_CI

	- name: Running all test pipelines (macaque)
	run: \|
	python segment_skull.py -data /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra -out /home/runner/work/skullTo3d/skullTo3d/macapype_CI/cenir-macaque-petra/results -soft ANTS_test_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt T1 petra

Provide feedback