kmeans for ct

Macatools · Nov 4, 2024 · e2cc443 · e2cc443
1 parent cbe9f74
commit e2cc443
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Showing 2 changed files with 3 additions and 4 deletions.
diff --git a/skullTo3d/pipelines/skull_pipe.py b/skullTo3d/pipelines/skull_pipe.py
@@ -382,7 +382,6 @@ def create_skull_ct_pipe(name="skull_ct_pipe", params={}):
     skull_ct_pipe.connect(inputnode, "native_T1",
                           align_ct_on_T1, "ref_file")
 
-
     # align_ct_on_stereo_T1
     align_ct_on_stereo_T1 = pe.Node(
         interface=RegResample(pad_val=0.0),

diff --git a/workflows/params_segment_macaque_ants_skull.json b/workflows/params_segment_macaque_ants_skull.json
@@ -179,11 +179,11 @@
     {
         "ct_skull_auto_mask":
         {
-            "kmeans": false,
+            "kmeans": true,
             "sample_bins": 30,
             "distance": 10,
-            "operation": "higher",
-            "index": 3
+            "operation": "lower",
+            "index": 2
         },
         "ct_skull_dilate":
         {