ubuntu:latest (but was accessing niolon16 ! )

nprocs=1 for all macaque
Macatools · Feb 9, 2024 · f466264 · f466264
1 parent 26cc116
commit f466264
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Showing 2 changed files with 7 additions and 11 deletions.
diff --git a/.github/workflows/build_on_prerelease.yml b/.github/workflows/build_on_prerelease.yml
@@ -68,9 +68,7 @@ jobs:
   run-pretest-ants-macaque-petra:
     name: Running all existing pipelines in skullTo3d_CI.zip (ANTS macaque petra)
     needs:  docker-build
-    runs-on: self-hosted
-    timeout-minutes: 1440
-
+    runs-on: ubuntu-latest
     steps:
       - name: Pull latest docker image
         run:
@@ -96,7 +94,7 @@ jobs:
 
       - name: Running all test pipelines (ANTS cenir macaque petra)
         run: |
-            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cenir-macaque-petra -out /data/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt petra -deriv -pad
+            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cenir-macaque-petra -out /data/cenir-macaque-petra/results -soft ANTS_prep_skull -species macaque -sub Magneto -brain_dt T1 T2 -skull_dt petra -deriv -pad -nprocs 1
 
             ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cenir-macaque-petra/results
 
@@ -113,8 +111,7 @@ jobs:
   run-pretest-ants-macaque-ct:
     name: Running all existing pipelines in skullTo3d_CI.zip (ANTS macaque CT)
     needs:  docker-build
-    runs-on: self-hosted
-    timeout-minutes: 1440
+    runs-on: ubuntu-latest
 
     steps:
       - name: Pull latest docker image
@@ -143,7 +140,7 @@ jobs:
       - name: Running all test pipelines (ANTS cerimed macaque CT)
         run: |
 
-            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull  -data /data/cerimed-macaque-ct -out /data/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt CT -deriv -pad
+            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull  -data /data/cerimed-macaque-ct -out /data/cerimed-macaque-ct/results -soft ANTS_prep_skull -species macaque -sub Marvin -ses 01 -brain_dt T1 T2 -skull_dt CT -deriv -pad -nprocs 1
 
             ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-macaque-ct/results
 
@@ -161,8 +158,7 @@ jobs:
   run-pretest-ants-marmo-petra:
     name: Running all existing pipelines in skullTo3d_CI.zip (ANTS marmo petra)
     needs:  docker-build
-    runs-on: self-hosted
-    timeout-minutes: 1440
+    runs-on: ubuntu-latest
 
     steps:
       - name: Pull latest docker image
@@ -190,7 +186,7 @@ jobs:
 
       - name: Running all test pipelines (ANTS cerimed marmo petra)
         run: |
-            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-marmo-petra -out /data/cerimed-marmo-petra/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad
+            docker run -i -v /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI:/data macatools/skullto3d:latest segment_skull -data /data/cerimed-marmo-petra -out /data/cerimed-marmo-petra/results -soft ANTS_noseg_skull -species marmo -sub Paolina -ses 01 -brain_dt T1 T2 -skull_dt T1 petra -deriv -pad -nprocs 1
 
             ls /home/runner/work/skullTo3d/skullTo3d/skullTo3d_CI/cerimed-marmo-petra/results
 

diff --git a/skullTo3d/_version.py b/skullTo3d/_version.py
@@ -1 +1 @@
-__version__ = '0.0.1-rc14'
+__version__ = '0.0.1-rc15'
Original file line number	Diff line number	Diff line change
		@@ -1 +1 @@
		__version__ = '0.0.1-rc14'
		__version__ = '0.0.1-rc15'