Add Aqua; use StatsBase; isolate some tests

MagneticResonanceImaging · May 21, 2024 · 1a9e9da · 1a9e9da
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Showing 5 changed files with 31 additions and 4 deletions.
diff --git a/test/Project.toml b/test/Project.toml
@@ -1,6 +1,7 @@
 [deps]
+Aqua = "4c88cf16-eb10-579e-8560-4a9242c79595"
 ForwardDiff = "f6369f11-7733-5829-9624-2563aa707210"
 LinearAlgebra = "37e2e46d-f89d-539d-b4ee-838fcccc9c8e"
 MAT = "23992714-dd62-5051-b70f-ba57cb901cac"
-Statistics = "10745b16-79ce-11e8-11f9-7d13ad32a3b2"
+StatsBase = "2913bbd2-ae8a-5f71-8c99-4fb6c76f3a91"
 Test = "8dfed614-e22c-5e08-85e1-65c5234f0b40"
diff --git a/test/aqua.jl b/test/aqua.jl
@@ -0,0 +1,9 @@
+using BlochSim: BlochSim
+import Aqua
+using Test: @testset
+
+@testset "aqua" begin
+    Aqua.test_ambiguities(BlochSim; broken = true)
+    Aqua.test_unbound_args(BlochSim; broken = true)
+    Aqua.test_all(BlochSim; ambiguities = false, unbound_args = false) # todo
+end
diff --git a/test/expm.jl b/test/expm.jl
@@ -1,3 +1,12 @@
+using BlochSim: BlochMcConnellMatrix, InstantaneousRF
+using BlochSim: ExcitationMatrix, FreePrecessionMatrix
+using BlochSim: Magnetization, MagnetizationMC, Spin, SpinMC
+using BlochSim: applydynamics!, excite!, freeprecess!, signal
+import BlochSim # BlochMcConnellDynamicsMatrix, expm! (etc)
+using ForwardDiff: ForwardDiff
+import ForwardDiff: derivative, gradient
+using Test: @test, @testset
+
 function expm1()
 
     T11 = 1

diff --git a/test/matlab.jl b/test/matlab.jl
@@ -1,3 +1,10 @@
+# test/matlab.jl
+
+using StatsBase: mean
+using MAT: matread
+using BlochSim
+using Test: @test, @testset
+
 function testA5b()
 
     answer = matread("matlabtestdata/testA5b.mat")

diff --git a/test/runtests.jl b/test/runtests.jl
@@ -1,10 +1,11 @@
 using BlochSim
-using ForwardDiff
 using LinearAlgebra
-using MAT
-using Statistics
 using Test
 
+@testset "aqua.jl" begin
+    include("aqua.jl")
+end
+
 @testset "BlochSim.jl" begin
     include("matlab.jl")
     include("magnetization.jl")