Merge pull request #273 from Magritte-code/259-scipy-version-incompat… #120
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| # Connected to the status badge | |
| name: Build | |
| on: | |
| push: | |
| branches: [ stable ] | |
| jobs: | |
| #Before doing anything, make sure that the code is linted | |
| run-linters: | |
| name: Run linters | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: Check out Git repository | |
| uses: actions/checkout@v3 | |
| - name: Install ClangFormat | |
| run: sudo apt-get install -y clang-format | |
| - name: Set up Python | |
| uses: actions/setup-python@v4 | |
| - name: Install Python dependencies | |
| run: pip install black flake8 | |
| - name: Run cpp linter | |
| uses: wearerequired/lint-action@v2 | |
| with: | |
| auto_fix: true | |
| clang_format: true | |
| clang_format_extensions: "c,cc,cpp,h,hpp,tpp" | |
| clang_format_dir: "src/" | |
| clang_format_auto_fix: true | |
| # black: true | |
| # black_extensions: "py" | |
| # black_dir: #ignoring python formatting for now, as the github action does not support multiple directories | |
| # -"src/" | |
| # -"tests/" | |
| # -"magritte/" | |
| # -"docs/" | |
| # black_auto_fix: true | |
| #Before testing, we increase the version number. Otherwise, some delay (>30 mins) may occur between updating the code and doing the version increase. | |
| UpdateVersion: | |
| needs: run-linters | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout repo | |
| uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ github.ref }} #err, version.txt file should not be linted; but still checking out latest commit to be sure | |
| - name: Update version (locally) using commit message to determine version increase | |
| run: echo "NewVersion=$(python updateVersion.py "${{github.event.head_commit.message}}")" >> $GITHUB_ENV | |
| working-directory: CI | |
| - name: Auto commit the version change | |
| uses: test-room-7/action-update-file@v1 | |
| with: | |
| file-path: version.txt | |
| commit-msg: "CI: increment version number to ${{env.NewVersion}}" | |
| github-token: ${{ secrets.GITHUB_TOKEN}} | |
| branch: stable | |
| BuildAndTest: | |
| needs: UpdateVersion | |
| runs-on: ${{ matrix.os }} | |
| strategy: | |
| matrix: | |
| include: | |
| - os: macos-latest | |
| C-COMPILER: gcc-14 | |
| CXX-COMPILER: g++-14 | |
| - os: ubuntu-latest | |
| C-COMPILER: gcc | |
| CXX-COMPILER: g++ | |
| defaults: | |
| run: | |
| shell: bash -l {0} # necessary for conda | |
| steps: | |
| - name: (linux) install libegl1 | |
| if: matrix.os == 'ubuntu-latest' | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install -y libegl1 libglu1-mesa | |
| #I think these dependencies are all required for gmsh; TODO: remove them after I remove gmsh | |
| # retrying checkout: 3 tries, with 5 seconds wait inbetween | |
| - name: Check out repository code (try 1) | |
| id: checkouttry1 | |
| uses: actions/checkout@v3 | |
| with: #no ref: thus checks out commit which triggered workflow | |
| submodules: true | |
| ref: ${{ github.ref }} #note: linter might create new commit; that one needs to be tested (github.ref points to branch -> latest commit on branch) | |
| - name: wait 5 s if attempt failed | |
| if: steps.checkouttry1.outcome == 'failure' | |
| run: sleep 5 | |
| - name: Check out repository code (try 2) | |
| id: checkouttry2 | |
| if: steps.checkouttry1.outcome == 'failure' | |
| uses: actions/checkout@v3 | |
| with: #no ref: thus checks out commit which triggered workflow | |
| submodules: true | |
| ref: ${{ github.ref }} | |
| - name: wait 5 s if attempt failed | |
| if: steps.checkouttry2.outcome == 'failure' | |
| run: sleep 5 | |
| - name: Check out repository code (try 3) | |
| id: checkouttry3 | |
| if: steps.checkouttry2.outcome == 'failure' | |
| uses: actions/checkout@v3 | |
| with: #no ref: thus checks out commit which triggered workflow | |
| submodules: true | |
| ref: ${{ github.ref }} | |
| # end retrying checkout | |
| - name: install gmsh | |
| run: | | |
| bash ./dependencies/get_gmsh.sh | |
| echo "$GITHUB_WORKSPACE/dependencies/gmsh/bin/" >> $GITHUB_PATH | |
| #err, relies a bit too much on absolute path for which the script install gmsh | |
| - name: gsmh version | |
| run: gmsh --version | |
| - name: setup python | |
| uses: actions/setup-python@v4 | |
| # retrying setting up conda: 3 tries, with 5 seconds wait inbetween | |
| - name: Install conda packages (try 1) | |
| id: setupcondatry1 | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: magritte | |
| environment-file: dependencies/conda_env.yml | |
| auto-activate-base: false | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge, defaults | |
| - name: wait 5 s if attempt failed | |
| if: steps.setupcondatry1.outcome == 'failure' | |
| run: sleep 5 | |
| - name: Install conda packages (try 2) | |
| id: setupcondatry2 | |
| if: steps.setupcondatry1.outcome == 'failure' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: magritte | |
| environment-file: dependencies/conda_env.yml | |
| auto-activate-base: false | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge, defaults | |
| - name: wait 5 s if attempt failed | |
| if: steps.setupcondatry2.outcome == 'failure' | |
| run: sleep 5 | |
| - name: Install conda packages (try 3) | |
| id: setupcondatry3 | |
| if: steps.setupcondatry2.outcome == 'failure' | |
| uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| activate-environment: magritte | |
| environment-file: dependencies/conda_env.yml | |
| auto-activate-base: false | |
| miniforge-variant: Mambaforge | |
| channels: conda-forge, defaults | |
| # end retrying conda | |
| - name: build Magritte | |
| run: bash build.sh | |
| env: | |
| CC : ${{ matrix.C-COMPILER }} | |
| CXX: ${{ matrix.CXX-COMPILER }} | |
| #and finally do our tests (located in the benchmarks folder) | |
| - name: run analytic tests | |
| run: pytest --verbose | |
| working-directory: tests/benchmarks/analytic | |
| - name: run numeric tests | |
| run: pytest --verbose | |
| working-directory: tests/benchmarks/numeric |