This repository contains a HighRes3DZMNet architecture for segmentation of volumetric data (it is implemented in highres3dnet_norm.py). Everything is based on the NiftyNet framework.

Set up for the first time

WINDOWS:

in CMD:

• cd to directory
• virtualenv venv
• "venv/Scripts/activate"
• pip install -r requirements.txt

You're ready to go. To deactivate virtual enviroment in CMD:

• deactivate

LINUX:

Similar process. Create virtual enviroment, activate it and install requirements.

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Always install packages with pip. After installation, make sure that you do:

• pip freeze > requirements.txt