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@MannLabs

Mann Labs

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  1. alphadia alphadia Public

    modular & open DIA search

    Jupyter Notebook 65 5

  2. alphapeptdeep alphapeptdeep Public

    Deep learning framework for proteomics

    Jupyter Notebook 121 22

  3. CKG CKG Public

    Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

    Jupyter Notebook 475 103

  4. alphapept alphapept Public

    A modular, python-based framework for mass spectrometry. Powered by nbdev.

    HTML 176 31

  5. alphatims alphatims Public

    An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

    Python 86 27

  6. alphamap alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    Jupyter Notebook 81 19

Repositories

Showing 10 of 44 repositories
  • alpharaw Public

    An open-source Python package to unify raw MS data accession and storage.

    MannLabs/alpharaw’s past year of commit activity
    Jupyter Notebook 21 Apache-2.0 4 8 1 Updated Mar 20, 2025
  • scPortrait Public

    scPortrait is a scalable toolkit to generate single-cell representations from raw microscopy images

    MannLabs/scPortrait’s past year of commit activity
    Python 42 Apache-2.0 3 20 3 Updated Mar 20, 2025
  • alphaquant Public

    An open-source Python package for accurate and sensitive peptide and protein quantification.

    MannLabs/alphaquant’s past year of commit activity
    Python 12 Apache-2.0 1 5 4 Updated Mar 20, 2025
  • alphabase Public

    Infrastructure of AlphaX ecosystem

    MannLabs/alphabase’s past year of commit activity
    Jupyter Notebook 37 Apache-2.0 9 9 5 Updated Mar 20, 2025
  • alphapeptdeep Public

    Deep learning framework for proteomics

    MannLabs/alphapeptdeep’s past year of commit activity
    Jupyter Notebook 121 Apache-2.0 22 25 3 Updated Mar 20, 2025
  • scPortrait-notebooks Public
    MannLabs/scPortrait-notebooks’s past year of commit activity
    Jupyter Notebook 2 Apache-2.0 0 0 1 Updated Mar 20, 2025
  • alphadia Public

    modular & open DIA search

    MannLabs/alphadia’s past year of commit activity
    Jupyter Notebook 65 Apache-2.0 5 22 6 Updated Mar 20, 2025
  • alphapeptstats Public

    Python Package for the downstream analysis of mass-spectrometry-based proteomics data

    MannLabs/alphapeptstats’s past year of commit activity
    Jupyter Notebook 66 Apache-2.0 16 23 15 Updated Mar 19, 2025
  • directlfq Public

    Fast and accurate label-free quantification for small and very large numbers of proteomes

    MannLabs/directlfq’s past year of commit activity
    Jupyter Notebook 48 Apache-2.0 5 6 1 Updated Mar 19, 2025
  • alphamap Public

    An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

    MannLabs/alphamap’s past year of commit activity
    Jupyter Notebook 81 Apache-2.0 19 17 5 Updated Mar 19, 2025
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