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1. CKG CKG Public

   Clinical Knowledge Graph (CKG) is a platform with twofold objective: 1) build a graph database with experimental data and data imported from diverse biomedical databases 2) automate knowledge disco…

   Jupyter Notebook 431 97

2. alphapept alphapept Public

   A modular, python-based framework for mass spectrometry. Powered by nbdev.

   HTML 167 29

3. alphapeptdeep alphapeptdeep Public

   Deep learning framework for proteomics

   Jupyter Notebook 109 20

4. alphatims alphatims Public

   An open-source Python package for efficient accession and visualization of Bruker TimsTOF raw data from the Mann Labs at the Max Planck Institute of Biochemistry.

   Python 81 25

5. alphamap alphamap Public

   An open-source Python package for the visual annotation of proteomics data with sequence specific knowledge.

   Jupyter Notebook 75 18

6. ProteomicsVisualization ProteomicsVisualization Public

   This is a collection of minimal code to visualize various aspects of proteomics data.

   Jupyter Notebook 67 9