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sidebar.yml
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sidebar.yml
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website:
sidebar:
contents:
- index.ipynb
- 01_lfq_manager.ipynb
- 02_normalization.ipynb
- 03_protein_intensity_estimation.ipynb
- 04_utils.ipynb
- 05_visualizations.ipynb
- 06_benchmarking.ipynb
- 07_testfile_handling.ipynb
- section: plotting_examples
contents:
- plotting_examples/example_outline.ipynb
- section: release
contents:
- section: macos
contents:
- section: Resources
contents:
- release/macos/Resources/conclusion.html
- section: release
contents:
- section: macos
contents:
- section: Resources
contents:
- release/macos/Resources/welcome.html
- section: test_data
contents:
- section: system_tests
contents:
- section: quicktests
contents:
- test_data/system_tests/quicktests/create_quicktest_tables.ipynb
- section: tests
contents:
- section: example_plots
contents:
- tests/example_plots/ion_trace_shifting.ipynb
- section: tests
contents:
- section: example_plots
contents:
- tests/example_plots/ion_trace_shifting_v2.ipynb
- section: tests
contents:
- section: learning_tests
contents:
- tests/learning_tests/runtimes_numba_numpy.ipynb
- section: tests
contents:
- section: normalization_tests
contents:
- tests/normalization_tests/check_between_tissue_normalization.ipynb
- section: tests
contents:
- section: normalization_tests
contents:
- tests/normalization_tests/test_normalization_on_large_datatsets.ipynb
- section: tests
contents:
- section: organellar_maps
contents:
- tests/organellar_maps/create_aq_reformatted_input_df_for_organellar_maps.ipynb
- section: tests
contents:
- section: organellar_maps
contents:
- tests/organellar_maps/plot_example_protein_ion_traces.ipynb
- section: tests
contents:
- section: organellar_maps
contents:
- tests/organellar_maps/run_organellar_maps_data.ipynb
- section: tests
contents:
- section: organellar_maps
contents:
- tests/organellar_maps/run_organellar_maps_new.ipynb
- section: tests
contents:
- section: quicktests
contents:
- tests/quicktests/run_pipeline_w_different_input_formats.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/comapare_charite_cohort_diann.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_andre_yeast_interactome.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_iq_DIA_set.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_iq_to_biognosys_dia.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_kuster200.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_kuster200_evidence.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_largefc_diann_iq.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_largefc_spectronaut_iq.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_largefc_spectronaut_precursor_vs_fragment.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_to_biognosys_dia.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_w_lfqbench_diann.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_w_lfqbench_spectronaut.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_w_maxquant.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_w_maxquant_evidence.ipynb
- section: tests
contents:
- section: ratio_tests
contents:
- tests/ratio_tests/compare_yeast_screen_diann.ipynb
- section: tests
contents:
- section: runtime_tests
contents:
- tests/runtime_tests/local_iq_scaling.ipynb
- section: tests
contents:
- section: runtime_tests
contents:
- tests/runtime_tests/runtime_test_scale_up.ipynb
- section: tests
contents:
- section: table_reformatting
contents:
- tests/table_reformatting/test_protgroup_annotation_evidence_table.ipynb