epimdj

Work in progress!

This repository contains Julia ports of the R code from Ottar Bjornstad's Epidemics: Models and Data Using R, Second Edition.

Each chapter is in a separate folder, as a single Quarto notebook. These can be rendered using the Quarto command line interface. For example, to render chapter2.qmd to Markdown, use the following.

quarto render chapter2.qmd --to markdown

Style-wise, the code is intended to match the R syntax as closely as possible, and so is not idiomatic Julia. Where there is a clear advantage to using Julia-specific packages and APIs, then this will be given in addition.

Pluto.jl port of Shiny apps

Ports of the accompanying Shiny apps at https://github.com/objornstad/ecomodelmarkdowns using Pluto.jl can be found in the pluto directory.