PET Pipelines Tests #17
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| name: PET Pipelines Tests | |
| on: | |
| schedule: | |
| - cron: 0 20 * * 3 # every Wednesday at 8pm | |
| permissions: | |
| contents: read | |
| jobs: | |
| test-pipelines-pet-MacOS: | |
| runs-on: | |
| - self-hosted | |
| - macOS | |
| timeout-minutes: 720 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: snok/install-poetry@v1 | |
| - name: Run tests for pet pipelines | |
| run: | | |
| make env.conda | |
| source ~/miniconda3/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| source "$(brew --prefix)/opt/modules/init/bash" | |
| module load clinica.all | |
| make install | |
| cd test | |
| poetry run pytest --verbose \ | |
| --working_directory=/Volumes/data/working_dir_mac \ | |
| --input_data_directory=/Volumes/data_ci \ | |
| --basetemp=/Volumes/data/tmp \ | |
| --junitxml=./test-reports/non_regression_pet_mac.xml \ | |
| --disable-warnings \ | |
| ./nonregression/pipelines/pet | |
| test-pipelines-pet-Linux: | |
| runs-on: | |
| - self-hosted | |
| - Linux | |
| timeout-minutes: 720 | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: snok/install-poetry@v1 | |
| - name: Run tests for pet pipelines | |
| run: | | |
| make env.conda | |
| source /builds/miniconda/etc/profile.d/conda.sh | |
| conda activate "${{ github.workspace }}"/env | |
| source /usr/local/Modules/init/profile.sh | |
| module load clinica.all | |
| make install | |
| cd test | |
| poetry run pytest --verbose \ | |
| --working_directory=/mnt/data/ci/working_dir_linux \ | |
| --input_data_directory=/mnt/data_ci \ | |
| --basetemp=/mnt/data/ci/tmp \ | |
| --junitxml=./test-reports/non_regression_pet_linux.xml \ | |
| --disable-warnings \ | |
| ./nonregression/pipelines/pet |