Skip to content
@MetabioinfomicsLab

Metabioinfomics Lab (Università degli Studi di Padova)

This is the code repository of the Metabioinfomics Lab.
README.md

🧪 Welcome to the Metabioinfomics GitHub Organization!

We are a research group based at the University of Padova, specialized in metagenomics applied to environmental sciences.

🔬 Reasearch

Our lab focuses on interdisciplinary research at the intersection of microbiology, bioinformatics, and environmental sustainability:

  • Microbial Ecology of Anaerobic Digestion
  • Metagenomics and Metabolic Modeling
  • Industrial Biotechnology and Food Systems
  • Circular Economy and Bioprocess Engineering (Carbon Capture, Utilization, and Storage)

For more information about our research activities, see the list of projects and publications) on our lab website.

Our team collaborates across disciplines to publish open-source software and datasets that support reproducible science — to learn more, check out our tools and browse our repositories.

👥 People

Principal Investigators (PIs):

For more details about our members and their projects, meet the full team here!

🤝 Collaborate With Us

We welcome contributions and collaborations! Feel free to:

Pinned Loading

  1. MICROPHERRET MICROPHERRET Public

    MICROPHERRET: MICRObial PHEnotypic tRait ClassifieR using machine lEarning Techniques

    Jupyter Notebook 10 2

  2. panDraft panDraft Public

    pan-Draft: automated reconstruction of species-representative metabolic models from multiple genomes

  3. metapresence metapresence Public

    Metapresence is a Python tool to calculate metrics to assess the evenness of the coverage distribution on DNA sequences, in order to infer their presence in a given sample.

    Python 8 1

  4. coco_paper coco_paper Public

    Metatranscriptomics-guided genome-scale metabolic modelling of microbial communities

    Jupyter Notebook 2

  5. KEMET KEMET Public

    Forked from Matteopaluh/KEMET

    KEGG Module Evaluation Tool

    Python

  6. feeds feeds Public

    Food wastE biopEptiDe claSsifier: from microbial genome to biopeptides function

    Python 2

Repositories

Showing 10 of 14 repositories
View all repositories

Top languages

Loading…

Most used topics

Loading…