Update dependencies #54
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nicolerg
commented
Nov 9, 2023
| nicolerg/ssGSEA2 | ||
| nicolerg/ssGSEA2, | ||
| cytoscape/RCy3, | ||
| plotrix/plotrix |
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Download plotrix from GitHub to avoid R-CMD check warning Requires (indirectly) orphaned package: ‘plotrix’. CRAN has marked plotrix as orphaned.
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plotrix is a dependency for mutoss, which is a dependency for metap
nicolerg
commented
Nov 9, 2023
| @@ -89,7 +90,9 @@ Remotes: | |||
| MoTrPAC/MotrpacRatTraining6moData, | |||
| MoTrPAC/MotrpacBicQC, | |||
| YuLab-SMU/ggtree, | |||
| nicolerg/ssGSEA2 | |||
| nicolerg/ssGSEA2, | |||
| cytoscape/RCy3, | |||
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Download development version of RCy3 to avoid R-CMD check error:
* deps::.: Can't install dependency RCy3 (>= 2.22.1)
* RCy3: Can't install dependency uchardet
* uchardet: Can't find package called uchardet.
Oddly, RCy3 v2.22.1 has already removed uchardet as a dependency, and I don't get an error installing RCy3 locally, so I'm not sure why this isn't working for the GitHub Actions check. This is a temporary fix that should be reverted once the GitHub Actions check can pass.
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RCy3untilR-CMD-checkwill install a version ofRCy3that doesn't depend onuchardet, which was removed from CRANplotrixpackage from GitHub instead of CRAN to resolveR-CMD checkwarning