Major speed increase for the omics weighting function and edge case bug fix. #142
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Added a pre-computation step and changed the a masking method.
The pre-computation increased speed by ~80-90%.
The mask change increased speed by another 5-15% while also fixing a bug that affected some reactions (mRNA_1 would associate with reactions from mRNA_12, mRNA_123, etc).
Overall speed reduces time from ~37 minutes to ~1 minute.