tiny-count: new edit pattern modes for the Mismatches selector#337

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AlexTate wants to merge 21 commits intomasterfrom issue-336

+493-100

Commits on May 29, 2024

AlignmentIter now returns the MD tag in alignment dictionaries when detailed_mismatch is True.
AlexTate
committed
Updating the AlignmentReader class to handle the new mismatch_pattern command line argument, and the new arguments for AlignmentIter.
AlexTate
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Adding 3 new selector classes:
AlexTate
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Adding the new *EditMatch classes to FeatureSelector.build_selectors(). Stage 2 alignment now passes the entire alignment dictionary to *EditMatch classes so that edit pattern can be evaluated usin…
AlexTate
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Adding the command line parameter to tiny-count, Run Configs, and CWL for specifying edit pattern.
AlexTate
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Minor changes to the NumericalMatch class. This class has been used for more than just length selection for a while now...
AlexTate
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Adding unit tests for AdarEditMatch and TutEditMatch
AlexTate
committed

Commits on May 31, 2024

Commits on Jun 10, 2024

Commits on Jul 8, 2024