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Montpellier Ressources Imagerie

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  1. imagej_macros_and_scripts imagej_macros_and_scripts Public

    ImageJ macros and scripts written at the imaging facility MRI

    Jupyter Notebook 32 16

  2. MetroloJ_QC MetroloJ_QC Public

    Java 13 1

  3. mri-workshop-machine-learning mri-workshop-machine-learning Public

    The MRI machine learning workshop

    Jupyter Notebook 3 1

  4. image-analysis-notebooks image-analysis-notebooks Public

    Jupyter Notebook 3

  5. napari-bigfish napari-bigfish Public

    A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images

    Python 3 1

  6. napari-J napari-J Public

    Connect Napari with FIJI/ImageJ

    Python 2 2

Repositories

Showing 10 of 72 repositories
  • napari-tree-rings Public

    A napari plugin to delineate bark, pith, and xylem annual rings and to measure their area and thickness on circular sections of a tree trunk.

    MontpellierRessourcesImagerie/napari-tree-rings’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 18, 2025
  • microscopemetrics-schema Public
    MontpellierRessourcesImagerie/microscopemetrics-schema’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Feb 14, 2025
  • microglia-analyzer Public

    A Napari plugin meant to detect and segment microglia before extracting some measures about them.

    MontpellierRessourcesImagerie/microglia-analyzer’s past year of commit activity
    Python 2 MIT 0 0 0 Updated Feb 13, 2025
  • imagej_macros_and_scripts Public

    ImageJ macros and scripts written at the imaging facility MRI

    MontpellierRessourcesImagerie/imagej_macros_and_scripts’s past year of commit activity
    Jupyter Notebook 32 MIT 16 3 0 Updated Feb 12, 2025
  • UNETR_2D_Tree_Rings Public Forked from AAitorG/UNETR_2D

    2D UNETR implementation in Tensorflow-keras, for the segmentation of annual tree rings.

    MontpellierRessourcesImagerie/UNETR_2D_Tree_Rings’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Feb 10, 2025
  • entry-exit-mouse-box Public
    MontpellierRessourcesImagerie/entry-exit-mouse-box’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Feb 10, 2025
  • horizontal-growth-of-trees Public

    A tool to delineate bark, pith, and xylem annual rings and to measure their area and thickness on circular sections of a tree trunk.

    MontpellierRessourcesImagerie/horizontal-growth-of-trees’s past year of commit activity
    Jupyter Notebook 0 MIT 0 0 0 Updated Feb 3, 2025
  • napari-bigfish Public

    A napari-plugin providing an alternative GUI for Big-FISH. Big-FISH is a python package for the analysis of smFISH images

    MontpellierRessourcesImagerie/napari-bigfish’s past year of commit activity
    Python 3 MIT 1 1 0 Updated Jan 16, 2025
  • segment-embryo Public

    Segment the cells of an ascidian embryon, detect the stained mRNA molecules per cell and analyze their distribution

    MontpellierRessourcesImagerie/segment-embryo’s past year of commit activity
    Python 0 MIT 0 0 0 Updated Jan 15, 2025
  • MetroloJ_QC Public
    MontpellierRessourcesImagerie/MetroloJ_QC’s past year of commit activity
    Java 13 1 2 0 Updated Jan 13, 2025
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