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v6.1.0 #19

Merged
merged 63 commits into from
Jan 31, 2024
Merged

v6.1.0 #19

merged 63 commits into from
Jan 31, 2024

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steffilazerte
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  • Clean up helper functions sunRiseSet() and timeToSunriset()
    • sunRiseSet() now required to run timeToSunriset()
    • Changed function argument names for clarity
  • Clean up docs for tagSum()
  • Add helper function tagmeSample() for an in-memory connection to the sample
    data base for running examples
  • Remove any functions that rely on deprecating spatial functions
  • Standardize names in docs and examples
  • Update tests internally
  • Remove placeholder for French documents (will add back in once we get translations)
  • Respect tagme() skip
  • Only check for nodeData on SensorStations

@steffilazerte
Simplify sunRiseSet()
d743e11 
- Install lutz by default (fixes #1244)
- Omit use of 'hitID' (fixes #1397)
@steffilazerte
Fix timeToSunriset()
9adb8fe 
- Use sunRiseSet under the hood
- Use correct 'local' date when calculating sunrise/sunset times
- avoid maptools (fixes #1397 and #1375)
- standardize checks
@steffilazerte
Finalize sunRiseSet
d158a98
@steffilazerte
Update sunrise docs
57381dc
@steffilazerte
Housekeeping docs
1876465
@steffilazerte
Update tagSum
7fcc79b 
 - clean up code and docs (add checks)
 - suppress startup messages from geosphere
 - no spatial issues but still the message about sp (but not relevant to this function; fixes #1375)
@steffilazerte
Update docs and examples using tags in memory
18012ba
@steffilazerte
Update docs and examples
61a621d 
- simplify
- use tagmeSample()
@steffilazerte
Update tests
d70c3fc 
- testthat ed3
- withr to control files and database connections
- simplify and disconnect between blocks
@steffilazerte
Avoid aes_string (deprecated)
6c714bd
@steffilazerte
Fix tidyselect warnings
9af0bcb
@steffilazerte
Skip if no file automatically gets file from extdata
4e83e97
@steffilazerte
Housekeeping
42f2c61
@steffilazerte
tweak tests
b02f985
@steffilazerte
Remove French language placeholders from docs (wait until we get tran…
2f305c3 
…slations)

- Update pkgcheck actions
@steffilazerte
Update package check actions
ca1ef49
@steffilazerte
Add dev version
ae3f72d
@steffilazerte
Fix pkgdown yaml
5ab6d56
@steffilazerte
Fix comments in yaml
30c3fc6
@steffilazerte
Carry forward the skip arguments (fixes MotusWTS/Motus-TO-DO#1402)
c43a3f6
@steffilazerte
Remove year/month/day from activity tables (fixes MotusWTS/Motus-TO-D…
632917a 
…O#1398)
@steffilazerte
Add missing repo for rnaturalearthhires
bb48107
@steffilazerte
Add R-Universe link in README to associate motus with Birds Canada in…
cd4f81d 
… all R-Universe searches.
@steffilazerte
Add missing function to list
de2ab34
@steffilazerte
Cancel previous jobs as needed
6cfdec9
@steffilazerte
Skip test if server unresponsive
ef30304
@steffilazerte
Tweak documentation
45b8f7e
@steffilazerte
Fix messaging for non-standard HTTP errors
3ce4c52
@steffilazerte
Update plotRoute map
d76acc1 
- Standardize arguments
- Use ggspatial rather than ggmap for map tiles.
@steffilazerte
Move GPS tests
e03c9bb 
- standardize inputs
- fix use of indices
@steffilazerte
Add rnaturalearthdata to pkgdown process
55845c4
@steffilazerte
Add required suggests for ggspatial
e356501
@steffilazerte
Fix plotSite usage
3f5af23
@steffilazerte
Skip sensor node download if not a SensorStation (fixes MotusWTS/Motu…
b89a42c 
…s-TO-DO#1356)
@steffilazerte
Simplify/correct tests
bbc71e5
@steffilazerte
Fix use of tagme
5f722bb 
- tagme(dir = ...) now correctly downloads projects as well as receivers and respects skips (MotusWTS/Motus-TO-DO#1402)
- tagme(receiver) will only check nodedata for receivers if not countOnly (MotusWTS/Motus-TO-DO#1356)
- don't use update FALSE for new databases
@steffilazerte
Add messages to deprectate
9e2e742
@steffilazerte
Remove reference to appendices
76c2260
@steffilazerte
Remove year, month, day from newly created activity tables (fixes Mot…
c58a9e8 
…usWTS/Motus-TO-DO#1398)
@steffilazerte
Housekeeping
4074c05
@steffilazerte
Update internal data
b075ef9
@steffilazerte
Add srvTimeout() to handle timeout limits (Address MotusWTS/Motus-TO-…
401431a 
…DO#1426)
@steffilazerte
Update use of new and update in tagme()
4e0a3c6
@steffilazerte
Catch/fix funny dates in admInfo
50fae94
@steffilazerte
Timeout in skip_if_no_server (related to #1426)
641f3fa
@steffilazerte
Housekeeping
b5388c5
@steffilazerte
Catch missing directory
eb44590
@steffilazerte
Fix tests
a68d1ca 
- Use original gps examples
- Ping API for server timeouts
- fix inconsistencies
- avoid activity tests because of name changes
@steffilazerte
Housekeeping
128b842
@steffilazerte
Fix tests
dcb7242
@steffilazerte
Add missing package for articles
26bc706
@steffilazerte
Fix windows tests?
4f2e019
@steffilazerte
Deploy pages even on PR
6cd099b
@steffilazerte
Try to clear more files for windows testing
77efc52
@steffilazerte
Add new article (fix merge issues)
2bfdd86 
Merge branch 'master' into dev

# Conflicts:
#	_pkgdown_fr.yml
@steffilazerte
New article requires rms
56f8204
@steffilazerte
Tweak new vignette
1d6a7dd 
- Allow sample data in different folders
@steffilazerte
Bump version
424c56a
@steffilazerte steffilazerte merged commit a99ea0a into master Jan 31, 2024
6 checks passed
@steffilazerte steffilazerte deleted the dev branch January 31, 2024 17:13
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@steffilazerte