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@Multiscale-Genomics

Multiscale Genomics

Virtual Research Environment- Supporting the 3D/4D genomics community with tools to integrate navigation from sequence to 3D/4D chromatin dynamics data.

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  1. VRE VRE Public

    MuG Virtual Research Environment

    JavaScript 6

  2. ftdock ftdock Public

    Rigid-body protein-DNA sampling

    C 2 1

  3. mg-tool-api mg-tool-api Public

    Forked from marcopasi/mg-tool-api

    This library outlines the main structures related to the tools section of the VRE.

    Python 2 1

  4. mg-rest-adjacency mg-rest-adjacency Public

    RESTful API providing adjacency data stored in hdf5 files that have been generated with the scripts in the mg-storage-hdf5 / mg-process-fastq repo

    Python 1

  5. mg-process-fastq mg-process-fastq Public

    Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)

    Python 1 3

  6. pydockdna_tool pydockdna_tool Public

    VRE pyDockDNA tool manager

    C++ 1

Repositories

Showing 10 of 33 repositories
  • VRE Public

    MuG Virtual Research Environment

    Multiscale-Genomics/VRE’s past year of commit activity
    JavaScript 6 Apache-2.0 0 0 4 Updated Jul 7, 2020
  • VRE_data_api Public

    Simple API remotely accessing the VRE user files

    Multiscale-Genomics/VRE_data_api’s past year of commit activity
    C++ 0 2 0 0 Updated Dec 12, 2019
  • pyCHiC Public

    Repository containing pipeline and tools to analyse capture Hi-C data

    Multiscale-Genomics/pyCHiC’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Mar 1, 2019
  • CHi-C Public
    Multiscale-Genomics/CHi-C’s past year of commit activity
    Python 0 Apache-2.0 0 0 0 Updated Feb 25, 2019
  • VRE_tool_jsons Public

    VRE-tool integration

    Multiscale-Genomics/VRE_tool_jsons’s past year of commit activity
    Python 0 1 0 0 Updated Jan 11, 2019
  • mg-tool-api Public Forked from marcopasi/mg-tool-api

    This library outlines the main structures related to the tools section of the VRE.

    Multiscale-Genomics/mg-tool-api’s past year of commit activity
    Python 2 Apache-2.0 3 2 0 Updated Nov 27, 2018
  • Bam_QC Public Forked from rehamFatima/Bam_QC

    Wrapper for BamQC

    Multiscale-Genomics/Bam_QC’s past year of commit activity
    Python 0 Apache-2.0 1 0 0 Updated Nov 20, 2018
  • mg-process-fastq Public

    Scripts required for the processing of FASTQ files (eg generating adjacency lists for Hi-C data)

    Multiscale-Genomics/mg-process-fastq’s past year of commit activity
    Python 1 Apache-2.0 3 13 2 Updated Nov 19, 2018
  • mg-process-test Public

    Example pipelines file that is ready to run in the VRE matching the code in the HowTo documentation

    Multiscale-Genomics/mg-process-test’s past year of commit activity
    Python 1 Apache-2.0 1 0 0 Updated Nov 5, 2018
  • mg-docs Public

    Documentation for developers creating tools and pipelines for the MuG VRE

    Multiscale-Genomics/mg-docs’s past year of commit activity
    Shell 0 Apache-2.0 0 0 0 Updated Nov 5, 2018
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