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Refactor code architecture#27

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MyPyDavid merged 91 commits intomainMyPyDavid/raman-fitting:mainfrom refactor-code-architectureMyPyDavid/raman-fitting:refactor-code-architectureCopy head branch name to clipboardMar 10, 2024

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Commits

Commits on Oct 29, 2023

• chore: refactor config

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• chore: refactor models

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• build: rm py3.7

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• test: mv example files to test_fixtures

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• style: fix type checking

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• chore: add config file option

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• chore: refactor file parsers and validation

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• tests: fix test empty file

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• chore: refactor post process methods

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• test: fix test imports

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• cli: update arg

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• build: support only python 3.11 and higher

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• fix arg run_mode debug

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• fix func arg

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• ci: run only py 3.11

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Commits on Nov 11, 2023

• chore: refactor default models, add pydantic, mv to toml config

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• build: refactor build in toml and add dependencies

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Commits on Nov 25, 2023

• tests: update tests

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• chore: update config and default settings

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• feat: convert model to pydantic

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• feat: use tablib for data parsing

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• chore: style and clean up

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Commits on Nov 26, 2023

• chore: fix imports

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• ci: fix install

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Commits on Dec 8, 2023

• style: make ruff

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Commits on Dec 10, 2023

• test: update imports

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• chore: refactor processing

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• chore: refactor subpackages, imports, exports

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• chore: refactor deconvolution models

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• syle: make ruff

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• chore: fix test and processing

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• chore: fix bugs

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Commits on Jan 14, 2024

• build: update pre-commit add ruff

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• tests: refactor test fixtures

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• refactor: default models to config

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• refactor: config settings

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• refactor and convert models to pydantic

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• refactor and update file imports, add pydantic models

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• refactor delegating

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• refactor processing use pydantic and protocol

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• chore: style

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• tests: update and fix tests

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• build: update deps, add pydantic-settings

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Commits on Feb 11, 2024

• chore: rename variables and imports

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• chore: add timer to run fit

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• refactor: refactor functions and update code style

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• chore: update delegating functions

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• build: add loguru

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• chore: refactor exports plots and tables

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• chore: refactor files index functions

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• chore: refactor fit run

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Commits on Feb 12, 2024

• chore: refactor fit_spectrum_plot

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• chore: refactor RunModePaths

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• chore: fix style

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• test: update test paths

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• chore: add export paths to ExportManager

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Commits on Feb 17, 2024

• refactor calculate params post fit

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• fix tests and rename

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• refactor despiker

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• feat add normalization fit

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• chore add get_window func

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• refactor and rename funcs and vars

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Commits on Feb 18, 2024

• chore: fix main user package home setting for export

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• tests: fix plot formatting tests

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• chore: clean up

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• refactor fit spectrum plot

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Commits on Feb 19, 2024

• chore: fix load from index

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Commits on Mar 6, 2024

• refactor config settings

  

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• style fix typing

  

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• refactor windows into spectrum_regions.py from config

  

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Commits on Mar 9, 2024

• tests: migrate to pytest, add fixtures

  

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• chore: update config

  

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• build: autoupdate pre-commit

  

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• feat: add typer cli

  

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• chore: use loguru as logger

  

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• chore: rename to region and minor changes

  

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• Bump version: 0.7.0 → 0.8.0

  

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• feat: add decorator_with_kwargs by @ramonrosa

  

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• feat: add required params to calculate_ratio funcs

  

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• cli: fix and add make cmd

  

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• chore: resolve all sonar issues and rename windows into regions

  

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• chore: resolve sonar issue

  

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Commits on Mar 10, 2024

• feat: add support for multiprocessing

  

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• chore: clean up preprocessing

  

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• chore: add many minor changes

  

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• tests: add param ratio and fit model tests

  

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• feat: add calculate params

  

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• cli: update make index

  

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• chore: export fix plots

  

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• chore: add minor changes and fixes

  

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• tests: add test for base peak

  

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