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@Mye-InfoBank

Mye-InfoBank

COST Action CA20117 - Mye-InfoBank is dedicated to converting molecular profiles of myeloid cells into biomarkers for inflammation and cancer.

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  1. scRAFIKI scRAFIKI Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Nextflow 9

  2. downstream-analysis downstream-analysis Public

    R 1

  3. scib scib Public

    Forked from theislab/scib

    Benchmarking analysis of data integration tools

    Python

  4. cellxgene_VIP cellxgene_VIP Public

    Forked from interactivereport/cellxgene_VIP

    Enables cellxgene to generate violin, stacked violin, stacked bar, heatmap, volcano, embedding, dot, track, density, 2D density, sankey and dual-gene plot in high-resolution SVG/PNG format. It also…

    HTML

  5. cellxgene cellxgene Public

    Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    JavaScript

  6. SIMBA-QC SIMBA-QC Public

    This repository contains the source code of the python shiny app which is recommended to be used for the quality control of the SIMBA🦁 pipeline.

    Python

Repositories

Showing 10 of 13 repositories
  • hugo-unifier Public
    Mye-InfoBank/hugo-unifier’s past year of commit activity
    Python 0 0 0 0 Updated Apr 8, 2025
  • cellxgene Public Forked from chanzuckerberg/cellxgene

    An interactive explorer for single-cell transcriptomics data

    Mye-InfoBank/cellxgene’s past year of commit activity
    JavaScript 0 MIT 132 0 0 Updated Apr 5, 2025
  • gene-set-analysis Public
    Mye-InfoBank/gene-set-analysis’s past year of commit activity
    0 0 0 0 Updated Mar 21, 2025
  • DGE Public
    Mye-InfoBank/DGE’s past year of commit activity
    Jupyter Notebook 0 0 0 0 Updated Mar 21, 2025
  • atlas-exchange Public
    Mye-InfoBank/atlas-exchange’s past year of commit activity
    0 0 4 0 Updated Mar 21, 2025
  • gene-unification Public
    Mye-InfoBank/gene-unification’s past year of commit activity
    Jupyter Notebook 0 1 1 0 Updated Mar 21, 2025
  • downstream-analysis Public
    Mye-InfoBank/downstream-analysis’s past year of commit activity
    R 1 0 0 0 Updated Jan 22, 2025
  • scHPL Public Forked from lcmmichielsen/scHPL
    Mye-InfoBank/scHPL’s past year of commit activity
    Jupyter Notebook 0 MIT 2 0 0 Updated Sep 6, 2024
  • SIMBA-Downstream Public

    This repository contains the source code of the python shiny app which is recommended to be used for the downstream analysis of the output of the SIMBA🦁 pipeline.

    Mye-InfoBank/SIMBA-Downstream’s past year of commit activity
    Python 0 0 1 0 Updated Jul 16, 2024
  • scRAFIKI Public

    A nextflow pipeline for processing sc-RNASeq data, performing QC and integration and preparing the results for further investigation using cellxgene.

    Mye-InfoBank/scRAFIKI’s past year of commit activity
    Nextflow 9 BSD-3-Clause 0 5 0 Updated Jun 30, 2024
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