Merge pull request #32 from NCI-CGR/iss31

force samples.txt columns to be str
NCI-CGR · Nov 9, 2021 · 784d459 · 784d459
2 parents 309ec4c + 2b850c3
commit 784d459
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/workflow/rules/common.smk b/workflow/rules/common.smk
@@ -20,7 +20,7 @@ def get_samples(samplesFile):
 # read in the samples file, we assume that they are in this order: sample\tbam/cram\tindex    
 def read_samplesFile(samplesFile): 
     samplesTable = pd.read_table(samplesFile, sep="\t", 
-                   header='infer')
+                   header='infer', dtype=str)
     return(samplesTable)