-
Notifications
You must be signed in to change notification settings - Fork 1
Commit
This commit does not belong to any branch on this repository, and may belong to a fork outside of the repository.
- Loading branch information
Samuel Gurr
committed
May 2, 2024
1 parent
0ad757d
commit 04b86b8
Showing
8 changed files
with
63,110 additions
and
0 deletions.
There are no files selected for viewing
23 changes: 23 additions & 0 deletions
23
HPC_analysis/output/lcWGS/angsd/F1_Juveniles/F1_Juveniles_Merged.bed
Large diffs are not rendered by default.
Oops, something went wrong.
62,579 changes: 62,579 additions & 0 deletions
62,579
HPC_analysis/output/lcWGS/angsd/F1_Juveniles/F1_Juveniles_Merged.bim
Large diffs are not rendered by default.
Oops, something went wrong.
79 changes: 79 additions & 0 deletions
79
HPC_analysis/output/lcWGS/angsd/F1_Juveniles/F1_Juveniles_Merged.fam
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,79 @@ | ||
| adapter_trim.201_querydupscoord.bam adapter_trim.201_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.203_querydupscoord.bam adapter_trim.203_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.204_querydupscoord.bam adapter_trim.204_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.251_querydupscoord.bam adapter_trim.251_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.253_querydupscoord.bam adapter_trim.253_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.254_querydupscoord.bam adapter_trim.254_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.301_querydupscoord.bam adapter_trim.301_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.303_querydupscoord.bam adapter_trim.303_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.304_querydupscoord.bam adapter_trim.304_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.351_querydupscoord.bam adapter_trim.351_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.352_querydupscoord.bam adapter_trim.352_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.353_querydupscoord.bam adapter_trim.353_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J205-pH75_querydupscoord.bam adapter_trim.F1-J205-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J206-pH75_querydupscoord.bam adapter_trim.F1-J206-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J207-pH75_querydupscoord.bam adapter_trim.F1-J207-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J209-pH75_querydupscoord.bam adapter_trim.F1-J209-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J210-pH75_querydupscoord.bam adapter_trim.F1-J210-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J211-pH75_querydupscoord.bam adapter_trim.F1-J211-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J212-pH75_querydupscoord.bam adapter_trim.F1-J212-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J255-pH75_querydupscoord.bam adapter_trim.F1-J255-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J256-pH75_querydupscoord.bam adapter_trim.F1-J256-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J258-pH75_querydupscoord.bam adapter_trim.F1-J258-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J259-pH75_querydupscoord.bam adapter_trim.F1-J259-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J261-pH75_querydupscoord.bam adapter_trim.F1-J261-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J262-pH75_querydupscoord.bam adapter_trim.F1-J262-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J263-pH75_querydupscoord.bam adapter_trim.F1-J263-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J264-pH75_querydupscoord.bam adapter_trim.F1-J264-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J306-pH75_querydupscoord.bam adapter_trim.F1-J306-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J307-pH75_querydupscoord.bam adapter_trim.F1-J307-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J308-pH75_querydupscoord.bam adapter_trim.F1-J308-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J311-pH75_querydupscoord.bam adapter_trim.F1-J311-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J312-pH75_querydupscoord.bam adapter_trim.F1-J312-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J313-pH75_querydupscoord.bam adapter_trim.F1-J313-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J314-pH75_querydupscoord.bam adapter_trim.F1-J314-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J354-pH75_querydupscoord.bam adapter_trim.F1-J354-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J355-pH75_querydupscoord.bam adapter_trim.F1-J355-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J356-pH75_querydupscoord.bam adapter_trim.F1-J356-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J361-pH75_querydupscoord.bam adapter_trim.F1-J361-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J362-pH75_querydupscoord.bam adapter_trim.F1-J362-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J363-pH75_querydupscoord.bam adapter_trim.F1-J363-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J364-pH75_querydupscoord.bam adapter_trim.F1-J364-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J372-pH75_querydupscoord.bam adapter_trim.F1-J372-pH75_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.101_querydupscoord.bam adapter_trim.101_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.103_querydupscoord.bam adapter_trim.103_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.104_querydupscoord.bam adapter_trim.104_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.153_querydupscoord.bam adapter_trim.153_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.154_querydupscoord.bam adapter_trim.154_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.155_querydupscoord.bam adapter_trim.155_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.3_querydupscoord.bam adapter_trim.3_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.4_querydupscoord.bam adapter_trim.4_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.5_querydupscoord.bam adapter_trim.5_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J105-pH8_querydupscoord.bam adapter_trim.F1-J105-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J106-pH8_querydupscoord.bam adapter_trim.F1-J106-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J110-pH8_querydupscoord.bam adapter_trim.F1-J110-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J111-pH8_querydupscoord.bam adapter_trim.F1-J111-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J112-pH8_querydupscoord.bam adapter_trim.F1-J112-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J113-pH8_querydupscoord.bam adapter_trim.F1-J113-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J114-pH8_querydupscoord.bam adapter_trim.F1-J114-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J12-pH8_querydupscoord.bam adapter_trim.F1-J12-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J13-pH8_querydupscoord.bam adapter_trim.F1-J13-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J14-pH8_querydupscoord.bam adapter_trim.F1-J14-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J157-pH8_querydupscoord.bam adapter_trim.F1-J157-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J158-pH8_querydupscoord.bam adapter_trim.F1-J158-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J160-pH8_querydupscoord.bam adapter_trim.F1-J160-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J161-pH8_querydupscoord.bam adapter_trim.F1-J161-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J162-pH8_querydupscoord.bam adapter_trim.F1-J162-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J163-pH8_querydupscoord.bam adapter_trim.F1-J163-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J164-pH8_querydupscoord.bam adapter_trim.F1-J164-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J16-pH8_querydupscoord.bam adapter_trim.F1-J16-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J17-pH8_querydupscoord.bam adapter_trim.F1-J17-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J18-pH8_querydupscoord.bam adapter_trim.F1-J18-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J65-pH8_querydupscoord.bam adapter_trim.F1-J65-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J66-pH8_querydupscoord.bam adapter_trim.F1-J66-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J67-pH8_querydupscoord.bam adapter_trim.F1-J67-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J68-pH8_querydupscoord.bam adapter_trim.F1-J68-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J69-pH8_querydupscoord.bam adapter_trim.F1-J69-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J6-pH8_querydupscoord.bam adapter_trim.F1-J6-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J70-pH8_querydupscoord.bam adapter_trim.F1-J70-pH8_querydupscoord.bam 0 0 0 -9 | ||
| adapter_trim.F1-J71-pH8_querydupscoord.bam adapter_trim.F1-J71-pH8_querydupscoord.bam 0 0 0 -9 |
30 changes: 30 additions & 0 deletions
30
HPC_analysis/output/lcWGS/angsd/F1_Juveniles/F1_Juveniles_Merged.log
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,30 @@ | ||
| PLINK v1.90b6.23 64-bit (28 May 2021) | ||
| Options in effect: | ||
| --allow-extra-chr | ||
| --double-id | ||
| --make-bed | ||
| --out F1_Juveniles_Merged | ||
| --vcf F1Juveniles_Merged.vcf.gz | ||
|
|
||
| Hostname: sedna.cluster | ||
| Working directory: /home/sgurr/Airradians_lcWGS/snakemake_pipeline/angsd/output/F1_Juveniles/query_dups | ||
| Start time: Wed May 1 09:43:25 2024 | ||
|
|
||
| Random number seed: 1714581805 | ||
| 95103 MB RAM detected; reserving 47551 MB for main workspace. | ||
| Allocated 35663 MB successfully, after larger attempt(s) failed. | ||
| --vcf: F1_Juveniles_Merged-temporary.bed + F1_Juveniles_Merged-temporary.bim + | ||
| F1_Juveniles_Merged-temporary.fam written. | ||
| 62579 variants loaded from .bim file. | ||
| 79 people (0 males, 0 females, 79 ambiguous) loaded from .fam. | ||
| Ambiguous sex IDs written to F1_Juveniles_Merged.nosex . | ||
| Using 1 thread (no multithreaded calculations invoked). | ||
| Before main variant filters, 79 founders and 0 nonfounders present. | ||
| Calculating allele frequencies... done. | ||
| Total genotyping rate is 0.58848. | ||
| 62579 variants and 79 people pass filters and QC. | ||
| Note: No phenotypes present. | ||
| --make-bed to F1_Juveniles_Merged.bed + F1_Juveniles_Merged.bim + | ||
| F1_Juveniles_Merged.fam ... done. | ||
|
|
||
| End time: Wed May 1 09:43:26 2024 |
79 changes: 79 additions & 0 deletions
79
HPC_analysis/output/lcWGS/angsd/F1_Juveniles/F1_Juveniles_Merged.nosex
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| Original file line number | Diff line number | Diff line change |
|---|---|---|
| @@ -0,0 +1,79 @@ | ||
| adapter_trim.201_querydupscoord.bam adapter_trim.201_querydupscoord.bam | ||
| adapter_trim.203_querydupscoord.bam adapter_trim.203_querydupscoord.bam | ||
| adapter_trim.204_querydupscoord.bam adapter_trim.204_querydupscoord.bam | ||
| adapter_trim.251_querydupscoord.bam adapter_trim.251_querydupscoord.bam | ||
| adapter_trim.253_querydupscoord.bam adapter_trim.253_querydupscoord.bam | ||
| adapter_trim.254_querydupscoord.bam adapter_trim.254_querydupscoord.bam | ||
| adapter_trim.301_querydupscoord.bam adapter_trim.301_querydupscoord.bam | ||
| adapter_trim.303_querydupscoord.bam adapter_trim.303_querydupscoord.bam | ||
| adapter_trim.304_querydupscoord.bam adapter_trim.304_querydupscoord.bam | ||
| adapter_trim.351_querydupscoord.bam adapter_trim.351_querydupscoord.bam | ||
| adapter_trim.352_querydupscoord.bam adapter_trim.352_querydupscoord.bam | ||
| adapter_trim.353_querydupscoord.bam adapter_trim.353_querydupscoord.bam | ||
| adapter_trim.F1-J205-pH75_querydupscoord.bam adapter_trim.F1-J205-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J206-pH75_querydupscoord.bam adapter_trim.F1-J206-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J207-pH75_querydupscoord.bam adapter_trim.F1-J207-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J209-pH75_querydupscoord.bam adapter_trim.F1-J209-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J210-pH75_querydupscoord.bam adapter_trim.F1-J210-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J211-pH75_querydupscoord.bam adapter_trim.F1-J211-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J212-pH75_querydupscoord.bam adapter_trim.F1-J212-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J255-pH75_querydupscoord.bam adapter_trim.F1-J255-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J256-pH75_querydupscoord.bam adapter_trim.F1-J256-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J258-pH75_querydupscoord.bam adapter_trim.F1-J258-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J259-pH75_querydupscoord.bam adapter_trim.F1-J259-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J261-pH75_querydupscoord.bam adapter_trim.F1-J261-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J262-pH75_querydupscoord.bam adapter_trim.F1-J262-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J263-pH75_querydupscoord.bam adapter_trim.F1-J263-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J264-pH75_querydupscoord.bam adapter_trim.F1-J264-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J306-pH75_querydupscoord.bam adapter_trim.F1-J306-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J307-pH75_querydupscoord.bam adapter_trim.F1-J307-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J308-pH75_querydupscoord.bam adapter_trim.F1-J308-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J311-pH75_querydupscoord.bam adapter_trim.F1-J311-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J312-pH75_querydupscoord.bam adapter_trim.F1-J312-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J313-pH75_querydupscoord.bam adapter_trim.F1-J313-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J314-pH75_querydupscoord.bam adapter_trim.F1-J314-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J354-pH75_querydupscoord.bam adapter_trim.F1-J354-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J355-pH75_querydupscoord.bam adapter_trim.F1-J355-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J356-pH75_querydupscoord.bam adapter_trim.F1-J356-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J361-pH75_querydupscoord.bam adapter_trim.F1-J361-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J362-pH75_querydupscoord.bam adapter_trim.F1-J362-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J363-pH75_querydupscoord.bam adapter_trim.F1-J363-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J364-pH75_querydupscoord.bam adapter_trim.F1-J364-pH75_querydupscoord.bam | ||
| adapter_trim.F1-J372-pH75_querydupscoord.bam adapter_trim.F1-J372-pH75_querydupscoord.bam | ||
| adapter_trim.101_querydupscoord.bam adapter_trim.101_querydupscoord.bam | ||
| adapter_trim.103_querydupscoord.bam adapter_trim.103_querydupscoord.bam | ||
| adapter_trim.104_querydupscoord.bam adapter_trim.104_querydupscoord.bam | ||
| adapter_trim.153_querydupscoord.bam adapter_trim.153_querydupscoord.bam | ||
| adapter_trim.154_querydupscoord.bam adapter_trim.154_querydupscoord.bam | ||
| adapter_trim.155_querydupscoord.bam adapter_trim.155_querydupscoord.bam | ||
| adapter_trim.3_querydupscoord.bam adapter_trim.3_querydupscoord.bam | ||
| adapter_trim.4_querydupscoord.bam adapter_trim.4_querydupscoord.bam | ||
| adapter_trim.5_querydupscoord.bam adapter_trim.5_querydupscoord.bam | ||
| adapter_trim.F1-J105-pH8_querydupscoord.bam adapter_trim.F1-J105-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J106-pH8_querydupscoord.bam adapter_trim.F1-J106-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J110-pH8_querydupscoord.bam adapter_trim.F1-J110-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J111-pH8_querydupscoord.bam adapter_trim.F1-J111-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J112-pH8_querydupscoord.bam adapter_trim.F1-J112-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J113-pH8_querydupscoord.bam adapter_trim.F1-J113-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J114-pH8_querydupscoord.bam adapter_trim.F1-J114-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J12-pH8_querydupscoord.bam adapter_trim.F1-J12-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J13-pH8_querydupscoord.bam adapter_trim.F1-J13-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J14-pH8_querydupscoord.bam adapter_trim.F1-J14-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J157-pH8_querydupscoord.bam adapter_trim.F1-J157-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J158-pH8_querydupscoord.bam adapter_trim.F1-J158-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J160-pH8_querydupscoord.bam adapter_trim.F1-J160-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J161-pH8_querydupscoord.bam adapter_trim.F1-J161-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J162-pH8_querydupscoord.bam adapter_trim.F1-J162-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J163-pH8_querydupscoord.bam adapter_trim.F1-J163-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J164-pH8_querydupscoord.bam adapter_trim.F1-J164-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J16-pH8_querydupscoord.bam adapter_trim.F1-J16-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J17-pH8_querydupscoord.bam adapter_trim.F1-J17-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J18-pH8_querydupscoord.bam adapter_trim.F1-J18-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J65-pH8_querydupscoord.bam adapter_trim.F1-J65-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J66-pH8_querydupscoord.bam adapter_trim.F1-J66-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J67-pH8_querydupscoord.bam adapter_trim.F1-J67-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J68-pH8_querydupscoord.bam adapter_trim.F1-J68-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J69-pH8_querydupscoord.bam adapter_trim.F1-J69-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J6-pH8_querydupscoord.bam adapter_trim.F1-J6-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J70-pH8_querydupscoord.bam adapter_trim.F1-J70-pH8_querydupscoord.bam | ||
| adapter_trim.F1-J71-pH8_querydupscoord.bam adapter_trim.F1-J71-pH8_querydupscoord.bam |
Binary file added
BIN
+9.2 MB
HPC_analysis/output/lcWGS/angsd/F1_Juveniles_75/F1Juveniles_pH75.vcf.gz
Binary file not shown.
Binary file added
BIN
+18.4 MB
HPC_analysis/output/lcWGS/angsd/F1_Juveniles_8/F1Juveniles_pH8.vcf.gz
Binary file not shown.
Oops, something went wrong.