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Better study#65

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torstees wants to merge 51 commits intomainNIH-NCPI/ncpi-fhir-ig:mainfrom

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Commits on May 31, 2023

• Updated to newer version of 4

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  89df649

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• Switched Study Participant code to NCIT for convenience

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• Added Consortium Profile

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Commits on Jun 9, 2023

• Further refinements to research study with better examples

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• Update continuous_integration.yml

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Commits on Jun 12, 2023

• Update continuous_integration.yml

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• Update continuous_integration.yml

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• Update continuous_integration.yml

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• Update continuous_integration.yml

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  97e937e

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• Added term to support examples

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• Migrated to Ubuntu 22-04 and Java 11 to overcome jackyll errors

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  e38c098

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• Remove bad test fix that prevented CI from working

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  79abb2e

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• Remove bad test fix that prevented CI from working

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  7a8ae36

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• moved the consent codes to be separate codings

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• Initial content for ResearchStudyConsent pages

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• Stubs for page content for ResearchStudySubject

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• A bit more information about the research study subject resource

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Commits on Jun 13, 2023

• Refactor CMG Consent examples to use provision instead of category

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Commits on Jun 19, 2023

• Add the URN for Mesh as DbGAP has it

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• Add term used by one of the CMG disease restrictions

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  7784b82

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• Fixed code systems to eliminate some errors in publisher's qa report

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• Add term used by one of the CMG disease restrictions

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• Refinements to include changing disease restrictions to codes

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• Study VS needed for example in the disease use limitation extension

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• Rename to eliminate some publisher.jar errors

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Commits on Jun 26, 2023

• Added note about R4/R5 versions that can be later expanded to include actual differences

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  d4ffd48

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• Cleanup and light revision

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Commits on Jun 28, 2023

• Added constraint to require extension when using DS code

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• Additional refinement to the NCPI Research Study Profile page docs

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Commits on Jul 20, 2023

• A bit more clarification around accession ID

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• Further refinement of the language present on structure-definition pages

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Commits on Jul 24, 2023

• Update study notes to clarify relationship with study and study group

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Commits on Jul 31, 2023

• Added first pass of studyDesign extension

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• Added tables to clarify mappings

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Commits on Aug 1, 2023

• Force install to be sushi 2.10 since the current version is 3 which is incompatible with our code

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• Trying to stay within 2 but getting the most recent minor version.

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Commits on Aug 2, 2023

• Added extension for studyDesign codes and example usage

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Commits on Aug 18, 2023

• First pass at the research study example content

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• Moved Examples out into their own menu

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• Proper header numbers to get picked up by table of content

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Commits on Aug 21, 2023

• Added details about the logical Common Data Model Study

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• Added displays to the terms for clarity

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• Additional content

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Commits on Aug 23, 2023

• First pass at general example overview of research study

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• First pass at general example overview of research study

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• Additional refinements

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Commits on Oct 26, 2023

• Trying v4.3.0 to see if it will enable validation on HAPI 4.3

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Commits on Mar 4, 2024

• Adding an extra 'column' to verify our Phenotype profile works as desired

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• Sliced Phenotypes to permit other codes in addition to those supported by the ValueSet, phenotype codes

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• 'Officially' switched to 4.3.0B

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• Merge branch 'better-study' of https://github.com/NIH-NCPI/ncpi-fhir-ig into better-study

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