fix yaml #543
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name: build | |
on: [push] | |
jobs: | |
build: | |
name: build and test | |
runs-on: ubuntu-latest | |
strategy: | |
fail-fast: false | |
matrix: | |
version: [3.8] | |
steps: | |
- name: Cancel Previous Runs | |
uses: styfle/cancel-workflow-action@0.12.0 | |
with: | |
access_token: ${{ github.token }} | |
- uses: actions/checkout@v4 | |
- name: Setup conda | |
uses: s-weigand/setup-conda@v1 | |
with: | |
update-conda: true | |
python-version: ${{ matrix.version }} | |
conda-channels: anaconda | |
- name: Install essential | |
run: | | |
sudo apt update | |
sudo apt install build-essential pandoc | |
- name: Install conda packages | |
run: | | |
conda install -c anaconda cmake | |
conda install rdkit mpi4py h5py pytorch==2.0.0 torchvision==0.15.0 cpuonly -c pytorch -c conda-forge | |
conda install -c conda-forge libstdcxx-ng | |
conda install -c anaconda gxx_linux-64 | |
- name: Install the package | |
run: python -m pip install .[test,hpc,doc] | |
env: | |
CONDA_PREFIX: /usr/share/miniconda | |
# - name: Test with multithreading | |
# env: | |
# CONDA_PREFIX: /usr/share/miniconda | |
# run: mpirun -np 2 coverage run -m pytest tests_hvd | |
- name: Test with single thread | |
env: | |
CONDA_PREFIX: /usr/share/miniconda | |
run: coverage run -m pytest tests | |
- name: Combine all coverage results | |
run: | | |
coverage combine | |
coverage report | |
- name: Coveralls Parallel | |
run: coveralls --service=github | |
env: | |
GITHUB_TOKEN: ${{ secrets.github_token }} | |
COVERALLS_FLAG_NAME: python-${{ matrix.version }} | |
COVERALLS_PARALLEL: true | |
# Publish built docs to gh-pages branch. | |
# =============================== | |
- name: Commit documentation changes | |
run: | | |
git clone https://github.com/NLESC-JCER/QMCTorch.git --branch gh-pages --single-branch gh-pages | |
jupyter nbconvert --to notebook --execute docs/notebooks/sampling.ipynb | |
cp -r docs/_build/html/* gh-pages/ | |
cd gh-pages | |
touch .nojekyll | |
git config --local user.email "action@github.com" | |
git config --local user.name "GitHub Action" | |
git add . | |
git commit -m "Update documentation" -a || true | |
# The above command will fail if no changes were present, so we ignore | |
# that. | |
env: | |
CONDA_PREFIX: /usr/share/miniconda | |
- name: Push changes | |
uses: ad-m/github-push-action@master | |
with: | |
branch: gh-pages | |
directory: gh-pages | |
github_token: ${{ secrets.GITHUB_TOKEN }} | |
finish: | |
needs: build | |
runs-on: ubuntu-latest | |
steps: | |
- name: Coveralls Finished | |
uses: coverallsapp/github-action@master | |
with: | |
github-token: ${{ secrets.github_token }} | |
parallel-finished: true | |