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Polish analysis of a multiclosure test #1982

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Polish analysis of a multiclosure test #1982

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Commits on Jul 24, 2024

  1. Init analysis

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  2. Add other functions

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  3. Add other functions again

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  4. Init analysis

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  5. Add other functions

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  6. Add other functions again

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  7. Remove ipdbs and make sure multiclosure_inconsistent work

    @comane
    comane committed Jul 24, 2024
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  8. Add multiclosure comparefits

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  9. Add sklearn to pyproject

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  10. Scikit added to conda

    @comane
    comane committed Jul 24, 2024
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  11. added PCA bias variance example to validphys2/examples

    @comane
    comane committed Jul 24, 2024
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  12. l2 condition number plot

    @comane
    comane committed Jul 24, 2024
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  13. added l2 condition number plot

    @comane
    comane committed Jul 24, 2024
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  14. removed unused functions pca_covmat, dataset_fits_gaussian_parameters

    @comane
    comane committed Jul 24, 2024
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  15. updated multiclosure analysis with l2 plots

    @comane
    comane committed Jul 24, 2024
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  16. variance pdf has to be taken from the same fits

    @comane
    comane committed Jul 24, 2024
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  17. use np.nan and set default EVR to 0.99

    @comane
    comane committed Jul 24, 2024
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  18. cleaned bias variance table

    @comane
    comane committed Jul 24, 2024
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  19. added docs to func + removed sklearn preprocessing as unused

    @comane
    comane committed Jul 24, 2024
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  20. added single point dataset to example report

    @comane
    comane committed Jul 24, 2024
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  21. added bootstrap of bias distribution

    @comane
    comane committed Jul 24, 2024
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  22. added rbv plots as function of lambda

    @comane
    comane committed Jul 24, 2024
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  23. added ratio bias variance to multi closure report

    @comane
    comane committed Jul 24, 2024
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  24. forgot ratio_bias_variance template

    @comane
    comane committed Jul 24, 2024
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  25. fmt = 'o' for ratio bias variance plot

    @comane
    comane committed Jul 24, 2024
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  26. added functions for computing Rbv using old definition + runcard with… 

    … table
    @comane
    comane committed Jul 24, 2024
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  27. Piazza pulita 1: removed old plotting functions that were never used

    @comane
    comane committed Jul 24, 2024
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  28. Piazza pulita 2: removed principal_components_variance_distribution_d… 

    …ataset as we are not using it
    @comane
    comane committed Jul 24, 2024
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  29. moved single data colorbar plots to multiclosure.py/_output.py

    @giovannidecrescenzo @comane
    giovannidecrescenzo authored and comane committed Jul 24, 2024
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  30. scikit-dep >=1.4.1 in pyproject file

    @comane
    comane committed Jul 24, 2024
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  31. use mean theory covmat for PCA -> gives more stable values of variance

    @comane
    comane committed Jul 24, 2024
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  32. rewrote functions using new variance definition (covmat computed by a… 

    …veraging over covmats of all fits) and removed sklearn dependency
    @comane
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  33. removed sklearn dep from conda recipe meta file

    @comane
    comane committed Jul 24, 2024
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  34. removed variancepdf as unused

    @comane
    comane committed Jul 24, 2024
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  35. added check_multifit_replicas check

    @comane
    comane committed Jul 24, 2024
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  36. use plotting dataset labels for rbv vs lambda titles

    @comane
    comane committed Jul 24, 2024
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  37. added hlines for rbv = 1

    @comane
    comane committed Jul 24, 2024
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  38. added bootstrapped_internal_multiclosure_dataset_loader for tuple of … 

    …bootstrapped multiclosuretests
    @comane
    comane committed Jul 24, 2024
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  39. bootstrap of PCA regularised multiclosure tests

    @comane
    comane committed Jul 24, 2024
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  40. bootstrap for internal_data_loadeer objecgs

    @comane
    comane committed Jul 24, 2024
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  41. added bootstrapped_principal_components_bias_variance_dataset

    @comane
    comane committed Jul 24, 2024
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  42. added bootstrap table to report

    @comane
    comane committed Jul 24, 2024
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  43. changed defaults of bootstrap

    @comane
    comane committed Jul 24, 2024
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  44. added title for single data point in latex mode

    @comane
    Giovanni De Crescenzo authored and comane committed Jul 24, 2024
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  45. Add PCA on corr matrix on full dataset

    @andreab1997 @comane
    andreab1997 authored and comane committed Jul 24, 2024
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  46. fixed inconsistency with single data point and suggest different way … 

    …to compute error bands after bootstrap
    @giovannidecrescenzo @comane
    giovannidecrescenzo authored and comane committed Jul 24, 2024
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  47. added delta plots

    @giovannidecrescenzo @comane
    giovannidecrescenzo authored and comane committed Jul 24, 2024
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  48. use consistent bootstrap def and separate table datasets from table data

    @comane
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  49. fixed PCA of correlation matrix for full dataset

    @comane
    comane committed Jul 24, 2024
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  50. compute rbv scan using bootstrap uncertainty quantification

    @comane
    comane committed Jul 24, 2024
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  51. added full data bootstrapped table

    @comane
    comane committed Jul 24, 2024
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  52. slight change in def of delta hist

    @comane
    Giovanni De Crescenzo authored and comane committed Jul 24, 2024
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  53. added definition of delta in line with eq. 2.22

    @comane
    comane committed Jul 24, 2024
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  54. added definition of delta in line with eq. 2.22

    @comane
    comane committed Jul 24, 2024
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  55. added rbv scan for full dataset

    @comane
    comane committed Jul 24, 2024
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  56. added bootstrapped xi indicator function for full dataset

    @comane
    comane committed Jul 24, 2024
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  57. removed unused import from vp_multiclosure.py script

    @comane
    comane committed Jul 24, 2024
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  58. removed new lines

    @comane
    comane committed Jul 24, 2024
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  59. removed unused variables

    @comane
    comane committed Jul 24, 2024
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  60. _covmats as array instead of list of arrays

    @comane
    comane committed Jul 24, 2024
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  61. added eigendecomposition function

    @comane
    comane committed Jul 24, 2024
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