starting to add testing for I/O subroutine W3IOPO() so it can be converted to use netCDF #40
Workflow file for this run
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| name: io_gnu | |
| on: [push, pull_request, workflow_dispatch] | |
| # Cancel in-progress workflows when pushing to a branch | |
| concurrency: | |
| group: ${{ github.workflow }}-${{ github.event.pull_request.number || github.ref }} | |
| cancel-in-progress: true | |
| env: | |
| cache_key: gnu11 | |
| CC: gcc-10 | |
| FC: gfortran-10 | |
| CXX: g++-10 | |
| # Split into a steup step, and a WW3 build step which | |
| # builds multiple switches in a matrix. The setup is run once and | |
| # the environment is cached so each build of WW3 can share the dependencies. | |
| jobs: | |
| setup: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: checkout-ww3 | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ww3 | |
| # Cache spack, OASIS, and compiler | |
| # No way to flush Action cache, so key may have # appended | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| work_oasis3-mct | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | |
| # Build WW3 spack environment | |
| - name: install-dependencies-with-spack | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| run: | | |
| # Install NetCDF, ESMF, g2, etc using Spack | |
| sudo apt install cmake | |
| git clone -c feature.manyFiles=true https://github.com/JCSDA/spack.git | |
| source spack/share/spack/setup-env.sh | |
| spack env create ww3-gnu ww3/model/ci/spack_gnu.yaml | |
| spack env activate ww3-gnu | |
| spack compiler find | |
| spack external find cmake | |
| spack add mpich@3.4.2 | |
| spack concretize | |
| spack install --dirty -v | |
| - name: build-oasis | |
| if: steps.cache-env.outputs.cache-hit != 'true' | |
| run: | | |
| source spack/share/spack/setup-env.sh | |
| spack env activate ww3-gnu | |
| export WWATCH3_DIR=${GITHUB_WORKSPACE}/ww3/model | |
| export OASIS_INPUT_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/oasis3-mct | |
| export OASIS_WORK_PATH=${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct | |
| cd ww3/regtests/ww3_tp2.14/input/oasis3-mct/util/make_dir | |
| cmake . | |
| make VERBOSE=1 | |
| cp -r ${GITHUB_WORKSPACE}/ww3/regtests/ww3_tp2.14/input/work_oasis3-mct ${GITHUB_WORKSPACE} | |
| io_gnu: | |
| needs: setup | |
| runs-on: ubuntu-latest | |
| steps: | |
| - name: install-dependencies | |
| run: | | |
| sudo apt-get update | |
| sudo apt-get install doxygen gcovr valgrind | |
| - name: checkout-ww3 | |
| uses: actions/checkout@v3 | |
| with: | |
| path: ww3 | |
| - name: cache-env | |
| id: cache-env | |
| uses: actions/cache@v3 | |
| with: | |
| path: | | |
| spack | |
| ~/.spack | |
| work_oasis3-mct | |
| key: spack-${{ runner.os }}-${{ env.cache_key }}-${{ hashFiles('ww3/model/ci/spack_gnu.yaml') }} | |
| - name: build-ww3 | |
| run: | | |
| source spack/share/spack/setup-env.sh | |
| spack env activate ww3-gnu | |
| set -x | |
| cd ww3 | |
| export CC=mpicc | |
| export FC=mpif90 | |
| export OASISDIR=${GITHUB_WORKSPACE}/work_oasis3-mct | |
| mkdir build && cd build | |
| pwd | |
| echo "${GITHUB_WORKSPACE}" | |
| export LD_LIBRARY_PATH="/home/runner/work/WW3/WW3/spack/var/spack/environments/ww3-gnu/.spack-env/view/:$LD_LIBRARY_PATH" | |
| which ncdump | |
| cmake -DSWITCH=${GITHUB_WORKSPACE}/ww3/model/tests/data/switch.io -DCMAKE_BUILD_TYPE=Debug -DCMAKE_Fortran_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" -DCMAKE_C_FLAGS="-g -fprofile-abs-path -fprofile-arcs -ftest-coverage -O0 -Wall -fno-omit-frame-pointer -fsanitize=address" .. | |
| make -j2 VERBOSE=1 | |
| ctest --verbose --output-on-failure --rerun-failed | |
| gcovr --root .. -v --html-details --exclude ../model/tests --exclude CMakeFiles --print-summary -o test-coverage.html &> /dev/null | |
| - name: upload-test-coverage | |
| uses: actions/upload-artifact@v3 | |
| with: | |
| name: ww3-test-coverage | |
| path: | | |
| ww3/build/*.html | |
| ww3/build/*.css | |