Update j-jobs to be bash linter compliant

.editorconfig

@@ -22,6 +22,20 @@ indent_style = tab
 indent_size = 4
 max_line_length = 79
 
+[jobs/*]
+indent_style = space
+indent_size = 4
+shell_variant = bash
+switch_case_indent = true
+space_redirects = true
+
+[*.{sh,bash}]
+indent_style = space
+indent_size = 4
+shell_variant = bash
+switch_case_indent = true
+space_redirects = true
+
 [*.{diff}]
 trim_trailing_whitespace = false
 

dev/jobs/aerosol_init.sh

@@ -40,5 +40,4 @@ fi
 ##############################################################
 # Exit cleanly
 
-
 exit 0

dev/jobs/anal.sh

@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGLOBAL_ATMOS_ANALYSIS"
 status=$?
 
-
 exit "${status}"

dev/jobs/analcalc.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="analcalc"
@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGLOBAL_ATMOS_ANALYSIS_CALC"
 status=$?
 
-
 exit "${status}"

dev/jobs/analdiag.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="analdiag"
@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ATMOS_ANALYSIS_DIAG"
 status=$?
 
-
 exit "${status}"

dev/jobs/atmos_ensstat.sh

@@ -10,7 +10,7 @@ set -x
 # Source FV3GFS workflow modules
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="atmos_ensstat"
 
@@ -19,14 +19,14 @@ IFS=', ' read -r -a fhr_list <<< "${FHR_LIST}"
 
 export FORECAST_HOUR jobid
 for FORECAST_HOUR in "${fhr_list[@]}"; do
-	fhr3=$(printf '%03d' "${FORECAST_HOUR}")
-	jobid="${job}_f${fhr3}.$$"
-	###############################################################
-	# Execute the JJOB
-	###############################################################
-	"${HOMEgfs}/jobs/JGLOBAL_ATMOS_ENSSTAT"
-	status=$?
-	[[ ${status} -ne 0 ]] && exit "${status}"
+    fhr3=$(printf '%03d' "${FORECAST_HOUR}")
+    jobid="${job}_f${fhr3}.$$"
+    ###############################################################
+    # Execute the JJOB
+    ###############################################################
+    "${HOMEgfs}/jobs/JGLOBAL_ATMOS_ENSSTAT"
+    status=$?
+    [[ ${status} -ne 0 ]] && exit "${status}"
 done
 
 exit 0

dev/jobs/atmos_products.sh

@@ -10,7 +10,7 @@ set -x
 # Source FV3GFS workflow modules
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="atmos_products"
 
@@ -19,14 +19,14 @@ IFS=', ' read -r -a fhr_list <<< "${FHR_LIST}"
 
 export FORECAST_HOUR jobid
 for FORECAST_HOUR in "${fhr_list[@]}"; do
-	fhr3=$(printf '%03d' "${FORECAST_HOUR}")
-	jobid="${job}_f${fhr3}.$$"
-	###############################################################
-	# Execute the JJOB
-	###############################################################
-	"${HOMEgfs}/jobs/JGLOBAL_ATMOS_PRODUCTS"
-	status=$?
-	[[ ${status} -ne 0 ]] && exit "${status}"
+    fhr3=$(printf '%03d' "${FORECAST_HOUR}")
+    jobid="${job}_f${fhr3}.$$"
+    ###############################################################
+    # Execute the JJOB
+    ###############################################################
+    "${HOMEgfs}/jobs/JGLOBAL_ATMOS_PRODUCTS"
+    status=$?
+    [[ ${status} -ne 0 ]] && exit "${status}"
 done
 
 exit 0

dev/jobs/awips.sh

@@ -4,7 +4,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="awips"
@@ -14,16 +14,16 @@ IFS=', ' read -r -a fhr_list <<< "${FHR_LIST}"
 
 export FHR3 jobid
 for fhr in "${fhr_list[@]}"; do
-  FHR3=$(printf '%03d' "${fhr}")
-  jobid="${job}_f${FHR3}.$$"
-  ###############################################################
-  # Execute the JJOB # TODO
-  ###############################################################
- # "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_AWIPS"
-  err=$?
-  if [[ ${err} -ne 0 ]]; then
-    exit "${err}"
-  fi
+    FHR3=$(printf '%03d' "${fhr}")
+    jobid="${job}_f${FHR3}.$$"
+    ###############################################################
+    # Execute the JJOB # TODO
+    ###############################################################
+    # "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_AWIPS"
+    err=$?
+    if [[ ${err} -ne 0 ]]; then
+        exit "${err}"
+    fi
 done
 
 exit 0

dev/jobs/awips_20km_1p0deg.sh

@@ -32,21 +32,21 @@ echo "=============== BEGIN AWIPS ==============="
 fhrlst=$(echo "${FHRLST}" | sed -e 's/_/ /g; s/f/ /g; s/,/ /g')
 
 for fhr3 in ${fhrlst}; do
-    fhr=$(( 10#${fhr3} ))
+    fhr=$((10#${fhr3}))
     # Process every 3 hrs from hour 0 up to hour 84
-    if [[ ${fhr} -ge 0 ]] && [[ ${fhr} -le 84 ]] ; then
-      if (( fhr % 3 == 0 )) ; then
-        export fcsthr="${fhr3}"
-        export DATA="${DATAROOT}/${jobid}.${fcsthr}"
-        "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
-      fi
+    if [[ ${fhr} -ge 0 ]] && [[ ${fhr} -le 84 ]]; then
+        if ((fhr % 3 == 0)); then
+            export fcsthr="${fhr3}"
+            export DATA="${DATAROOT}/${jobid}.${fcsthr}"
+            "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
+        fi
     # Process every 6 hrs from hour 90 up to hour 240
-    elif [[ ${fhr} -ge 90 ]] && [[ ${fhr} -le 240 ]] ; then
-      if (( fhr % 6 == 0 )) ; then
-        export fcsthr="${fhr3}"
-        export DATA="${DATAROOT}/${jobid}.${fcsthr}"
-        "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
-      fi
+    elif [[ ${fhr} -ge 90 ]] && [[ ${fhr} -le 240 ]]; then
+        if ((fhr % 6 == 0)); then
+            export fcsthr="${fhr3}"
+            export DATA="${DATAROOT}/${jobid}.${fcsthr}"
+            "${HOMEgfs}/jobs/JGFS_ATMOS_AWIPS_20KM_1P0DEG"
+        fi
     fi
 done
 

dev/jobs/ecen.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 ###############################################################
@@ -33,5 +33,4 @@ done
 ###############################################################
 # Exit out cleanly
 
-
 exit 0

dev/jobs/echgres.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="echgres"
@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ATMOS_CHGRES_FORENKF"
 status=$?
 
-
 exit "${status}"

dev/jobs/ediag.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="ediag"
@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ENKF_DIAG"
 status=$?
 
-
 exit "${status}"

dev/jobs/eobs.sh

@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ENKF_SELECT_OBS"
 status=$?
 
-
 exit "${status}"

dev/jobs/epos.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="epos"
@@ -34,5 +34,4 @@ done
 ###############################################################
 # Exit out cleanly
 
-
 exit 0

dev/jobs/esfc.sh

@@ -7,7 +7,7 @@ set -x
 source "${HOMEgfs}/dev/ush/load_gw_gsi_modules.sh"
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="esfc"
@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ENKF_SFC"
 status=$?
 
-
 exit "${status}"

dev/jobs/eupd.sh

@@ -18,5 +18,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGDAS_ENKF_UPDATE"
 status=$?
 
-
 exit "${status}"

dev/jobs/fbwind.sh

@@ -5,7 +5,7 @@ set -x
 ###############################################################
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="fbwind"
 export jobid="${job}.$$"

dev/jobs/fcst.sh

@@ -7,13 +7,13 @@ set -x
 # TODO clean this up once ncdiag/1.1.2 is installed on WCOSS2
 source "${HOMEgfs}/ush/detect_machine.sh"
 if [[ "${MACHINE_ID}" == "wcoss2" ]]; then
-  source "${HOMEgfs}/dev/ush/load_ufswm_modules.sh"
+    source "${HOMEgfs}/dev/ush/load_ufswm_modules.sh"
 else
-  source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
+    source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 fi
 status=$?
 if [[ ${status} -ne 0 ]]; then
-  exit "${status}"
+    exit "${status}"
 fi
 
 export job="fcst"

dev/jobs/fetch.sh

@@ -16,5 +16,4 @@ export jobid="${job}.$$"
 "${HOMEgfs}/jobs/JGLOBAL_FETCH"
 status=$?
 
-
 exit "${status}"

dev/jobs/gempak.sh

@@ -3,7 +3,7 @@
 set -x
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="gempak"
 
@@ -12,14 +12,14 @@ IFS=', ' read -r -a fhr_list <<< "${FHR_LIST}"
 
 export FHR3 jobid
 for fhr in "${fhr_list[@]}"; do
-  FHR3=$(printf '%03d' "${fhr}")
-  jobid="${job}_f${FHR3}.$$"
-  ###############################################################
-  # Execute the JJOB
-  ###############################################################
-  "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_GEMPAK"
-  err=$?
-  [[ ${err} -ne 0 ]] && exit "${err}"
+    FHR3=$(printf '%03d' "${fhr}")
+    jobid="${job}_f${FHR3}.$$"
+    ###############################################################
+    # Execute the JJOB
+    ###############################################################
+    "${HOMEgfs}/jobs/J${RUN^^}_ATMOS_GEMPAK"
+    err=$?
+    [[ ${err} -ne 0 ]] && exit "${err}"
 done
 
 exit 0

dev/jobs/gempakgrb2spec.sh

@@ -3,12 +3,11 @@
 set -x
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="gempakpgrb2spec"
 export jobid="${job}.$$"
 
-
 # Execute the JJOB
 "${HOMEgfs}/jobs/JGFS_ATMOS_GEMPAK_PGRB2_SPEC"
 

dev/jobs/gempakmeta.sh

@@ -5,7 +5,7 @@ set -x
 ###############################################################
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="gempakmeta"
 export jobid="${job}.$$"

dev/jobs/gempakmetancdc.sh

@@ -5,7 +5,7 @@ set -x
 ###############################################################
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="gempakmetancdc"
 export jobid="${job}.$$"

dev/jobs/gempakncdcupapgif.sh

@@ -5,7 +5,7 @@ set -x
 ###############################################################
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-if (( status != 0 )); then exit "${status}"; fi
+if ((status != 0)); then exit "${status}"; fi
 
 export job="gempakncdcupapgif"
 export jobid="${job}.$$"

dev/jobs/genesis.sh

@@ -6,7 +6,7 @@ set -x
 # Source FV3GFS workflow modules
 source "${HOMEgfs}/dev/ush/load_fv3gfs_modules.sh"
 status=$?
-(( status != 0 )) && exit "${status}"
+((status != 0)) && exit "${status}"
 
 export job="genesis"
 export jobid="${job}.$$"